Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   ACNHKQ_RS08975 Genome accession   NZ_CP182139
Coordinates   1876628..1877257 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain CUWW06     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1871628..1882257
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACNHKQ_RS08955 (ACNHKQ_08955) ycbZ 1872017..1873777 (-) 1761 WP_032280665.1 AAA family ATPase -
  ACNHKQ_RS08960 (ACNHKQ_08960) matP 1873963..1874415 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  ACNHKQ_RS08965 (ACNHKQ_08965) ompA 1874491..1875543 (-) 1053 WP_032280676.1 porin OmpA -
  ACNHKQ_RS08970 (ACNHKQ_08970) sulA 1875900..1876409 (-) 510 WP_000288706.1 SOS-induced cell division inhibitor SulA -
  ACNHKQ_RS08975 (ACNHKQ_08975) sxy/tfoX 1876628..1877257 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  ACNHKQ_RS08980 (ACNHKQ_08980) yccS 1877220..1879382 (-) 2163 WP_416522325.1 YccS family putative transporter -
  ACNHKQ_RS08985 (ACNHKQ_08985) yccF 1879392..1879838 (-) 447 WP_001261235.1 YccF domain-containing protein -
  ACNHKQ_RS08990 (ACNHKQ_08990) helD 1879961..1882015 (+) 2055 WP_000420536.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=1100538 ACNHKQ_RS08975 WP_000839153.1 1876628..1877257(+) (sxy/tfoX) [Escherichia coli strain CUWW06]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=1100538 ACNHKQ_RS08975 WP_000839153.1 1876628..1877257(+) (sxy/tfoX) [Escherichia coli strain CUWW06]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment