Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilL-C   Type   Machinery gene
Locus tag   ABXS88_RS11065 Genome accession   NZ_AP031572
Coordinates   2428779..2432309 (+) Length   1176 a.a.
NCBI ID   WP_353672106.1    Uniprot ID   -
Organism   Synechocystis sp. LKSZ1     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2423779..2437309
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABXS88_RS11040 (OLK001_21680) thrS 2423848..2425662 (+) 1815 WP_353672101.1 threonine--tRNA ligase -
  ABXS88_RS11045 (OLK001_21690) - 2425669..2426457 (-) 789 WP_353672102.1 hypothetical protein -
  ABXS88_RS11050 (OLK001_21700) - 2426572..2427399 (+) 828 WP_353672103.1 tetratricopeptide repeat protein -
  ABXS88_RS11055 (OLK001_21710) sipA 2427383..2427625 (-) 243 WP_353672104.1 regulatory protein SipA -
  ABXS88_RS11060 (OLK001_21720) era 2427717..2428655 (+) 939 WP_353672105.1 GTPase Era -
  ABXS88_RS11065 (OLK001_21730) pilL-C 2428779..2432309 (+) 3531 WP_353672106.1 hybrid sensor histidine kinase/response regulator Machinery gene
  ABXS88_RS11070 (OLK001_21740) - 2432309..2435398 (+) 3090 WP_353672107.1 alpha-mannosidase -
  ABXS88_RS11075 (OLK001_21750) psbN 2435395..2435526 (-) 132 WP_353672108.1 photosystem II reaction center protein PsbN -
  ABXS88_RS11080 (OLK001_21760) psbH 2435622..2435816 (+) 195 WP_353672109.1 photosystem II reaction center protein PsbH -
  ABXS88_RS11085 (OLK001_21770) - 2435922..2436170 (+) 249 WP_353672110.1 TatA/E family twin arginine-targeting protein translocase -
  ABXS88_RS11090 (OLK001_21780) - 2436270..2437046 (+) 777 WP_353672111.1 DUF1868 domain-containing protein -

Sequence

Protein


Download         Length: 1176 a.a.        Molecular weight: 129947.24 Da        Isoelectric Point: 4.2249

>NTDB_id=110033 ABXS88_RS11065 WP_353672106.1 2428779..2432309(+) (pilL-C) [Synechocystis sp. LKSZ1]
MMNSDPQATPAIDNWFENDMEGLFQDLESADQPAASENLDEFNDLMDFFDDDPVSSVTDFGLPAEIILDPESETPFPEET
VPVEDAVAEDLPQRMVLSFDSAEAELEALFDNANEADVQPSSTDPYETANWLEIDHLMAEQPVAETPANHDDFENLDQWF
DQQVEEQPVDLNSAAFATLKQPEDAELLSAFATLKQSDLDDILNVARQTLPEKITVTPFENELDDLRELLGLESEAPATE
TAAPSLALAPIFYDDLEQWDNLLAQGPSFPVPDLFNPIALENLLNAPARSVSTLQAPPLTPIKRPVTAVAAPTEEIEDEF
KDLEALLEQADRTMGGPPAMVAVGGQRLQSRSRATKAKVFEQTMRVPVKQLDNLSNLIGELVIKRNRLEQDQERLRQFLD
NLLNQTQNLSEVGDRMHDLHERTLLEGALLASRQSARYQSKVTYPGDKATVPGASTLADQPFDALEMDRFTGFHLLSQEM
IELIVRVRESASDIQYLVDETDQLARSLRQVTTQLQEGMTQSRMVPFAQTADRLPRAIREVSLKLNKKVNLEVEGREVLI
DKMILEQLYNPMTHLVNNAITHGIETPEVRRQLGKLDEGKLSVRAFLQGNQTLITVADDGAGIDAERVKQKAIEKGLITA
LEAQNMGEQDVYDLLFHAGFSTKDKVDDFAGRGVGLDVVRTSLLEIRGGVTVDSALGRGTTFTIRLPITLSICKALCCLS
ERARIAFPMDGVEDTKDYLPSEVFTNEEGQKCVSWNDQPLPIHPLGDLLSYNRILSRGTVYGGAPEDDSLAIVILRGGSG
NLLALQIDQVLGEEEIVIKQIEGPVPKPPGIAGATVRGDGSIMPIGDVLELMEIAQGRMRTDSSGGLWRKTLTPAASELQ
LEPTVLIVDDSITVRELLSLSFSKAGYRVEQARDGREALEKLKSGLPCDLVFCDIEMPRMNGLELLSQLQADEMLANLPV
ALLTSRGADRHRKMAAKLGASGYFTKPYTEKDLLDAAGRMLQGEILLPGSVRQSNSVLSRFKQAKLAAPEASPPKLEMPE
SHPPRVLIIDDSVMVREMLSLTFRKANYITETARDGQDAWEKLRSGLPCDLILCDIEMPRMNGMELLDRLHEDPELSQIP
MAMITSRGAQKMQRLAAEKGAKGYFVKPYIEEALLEASQRLLAGEVLLDVNALVED

Nucleotide


Download         Length: 3531 bp        

>NTDB_id=110033 ABXS88_RS11065 WP_353672106.1 2428779..2432309(+) (pilL-C) [Synechocystis sp. LKSZ1]
ATGATGAATAGTGACCCCCAAGCCACGCCAGCGATCGACAATTGGTTTGAAAATGACATGGAAGGGTTATTTCAGGATTT
AGAGTCGGCAGACCAGCCAGCAGCTTCAGAAAATCTCGATGAATTCAACGACTTAATGGACTTTTTTGATGATGACCCCG
TCTCATCTGTGACGGATTTTGGCCTGCCCGCAGAGATTATATTAGACCCGGAATCAGAAACGCCTTTTCCCGAGGAGACA
GTACCGGTAGAAGATGCCGTGGCAGAAGATTTGCCCCAGCGCATGGTGTTGTCCTTTGATAGCGCGGAAGCAGAACTAGA
AGCCCTGTTTGATAACGCTAATGAAGCGGATGTGCAACCCAGTAGCACAGATCCCTACGAGACGGCCAACTGGCTGGAAA
TTGATCATTTGATGGCGGAACAACCCGTGGCGGAAACCCCGGCCAACCACGATGACTTTGAAAACCTAGACCAGTGGTTT
GATCAACAGGTAGAGGAGCAACCGGTTGACCTTAACAGTGCGGCCTTTGCGACGCTAAAACAGCCGGAGGATGCCGAGCT
ATTATCGGCTTTTGCGACGCTCAAGCAATCCGATCTCGATGACATTCTGAATGTGGCCCGTCAAACCCTACCGGAGAAGA
TAACGGTTACCCCCTTCGAGAACGAGTTAGATGACCTCCGGGAACTTTTGGGGCTTGAGAGTGAGGCCCCGGCGACCGAG
ACTGCGGCTCCGTCCCTTGCGTTAGCACCAATATTCTATGATGACTTAGAACAATGGGATAACCTGCTAGCCCAAGGGCC
AAGCTTTCCGGTGCCCGATTTATTTAATCCCATCGCCCTAGAAAATCTCCTGAATGCACCGGCTCGAAGCGTCTCGACGC
TCCAAGCACCACCGCTGACGCCAATTAAGCGCCCCGTCACGGCAGTAGCGGCCCCCACCGAGGAGATTGAAGATGAATTT
AAAGACCTTGAGGCCCTGCTAGAACAAGCCGATCGAACCATGGGCGGCCCTCCCGCCATGGTCGCCGTTGGTGGTCAGCG
CCTCCAATCCCGTAGCCGGGCAACAAAGGCCAAGGTCTTTGAGCAGACCATGCGGGTTCCGGTTAAGCAATTAGATAATT
TGAGTAACTTAATTGGGGAACTGGTCATTAAACGTAACCGTTTGGAGCAGGATCAGGAACGTCTGCGGCAGTTTCTCGAT
AATTTACTCAATCAAACGCAAAATTTGAGTGAGGTTGGCGACCGGATGCACGACCTTCATGAACGAACCCTGCTGGAGGG
GGCCCTCTTGGCCAGTCGTCAGTCTGCCCGTTACCAGTCCAAAGTGACTTACCCCGGTGATAAAGCCACGGTGCCTGGGG
CCAGTACCCTGGCCGACCAACCCTTCGATGCCCTAGAGATGGATCGGTTTACCGGCTTTCACCTCTTGTCCCAGGAGATG
ATTGAGTTAATTGTTCGGGTACGGGAATCAGCGTCCGATATCCAATACCTGGTAGATGAAACCGACCAGTTGGCCCGTTC
TCTGCGCCAGGTCACAACCCAACTCCAGGAGGGGATGACCCAGTCCCGGATGGTGCCCTTCGCCCAGACCGCAGACCGTC
TGCCCCGAGCGATTCGGGAAGTGTCCCTCAAACTCAACAAAAAAGTTAATTTAGAGGTTGAGGGGCGAGAGGTGCTGATT
GACAAAATGATCCTGGAGCAACTCTATAACCCCATGACCCACCTGGTGAATAATGCCATTACCCACGGCATTGAAACGCC
AGAGGTACGGCGTCAACTAGGCAAACTGGATGAGGGTAAGTTGAGCGTCAGGGCCTTTCTCCAAGGCAATCAGACCTTGA
TCACTGTGGCGGATGATGGGGCCGGCATTGATGCAGAACGGGTGAAACAAAAGGCCATCGAAAAAGGCCTAATTACGGCC
CTGGAAGCCCAGAATATGGGGGAACAGGATGTCTATGACCTCCTCTTCCATGCAGGCTTTAGTACTAAAGACAAGGTTGA
TGACTTTGCCGGACGGGGCGTGGGTCTAGATGTTGTCCGCACGAGCCTCCTAGAAATTCGCGGGGGCGTAACCGTCGATT
CCGCCCTTGGCAGGGGAACAACCTTTACCATTCGCCTTCCCATTACCCTCAGTATCTGTAAAGCCCTCTGCTGTTTGAGC
GAACGAGCCCGCATTGCCTTTCCCATGGATGGAGTTGAGGACACCAAGGACTACCTGCCCAGTGAGGTCTTCACCAACGA
AGAGGGGCAAAAATGTGTGTCCTGGAACGACCAGCCCCTCCCCATCCATCCCCTCGGAGATCTCCTGAGCTATAACCGAA
TTCTCAGTCGTGGTACTGTTTATGGTGGTGCGCCGGAGGACGATAGTCTGGCCATTGTGATTCTGCGCGGCGGCAGTGGA
AACCTTTTGGCCCTCCAGATAGATCAGGTATTGGGGGAAGAAGAAATTGTCATCAAACAAATTGAAGGGCCAGTTCCCAA
ACCACCAGGGATTGCTGGAGCCACTGTACGCGGCGATGGCAGTATTATGCCCATCGGTGATGTTTTAGAATTGATGGAAA
TTGCCCAGGGCCGGATGCGCACCGACAGCAGTGGTGGCCTCTGGCGCAAGACCTTAACTCCAGCGGCTAGCGAACTTCAG
TTAGAACCAACGGTGCTGATTGTGGATGACTCCATCACTGTGCGGGAATTACTGTCTTTGAGCTTCAGCAAGGCTGGTTA
TCGCGTAGAACAGGCCCGAGACGGACGCGAGGCCTTGGAAAAACTAAAATCAGGCCTTCCCTGCGACCTCGTCTTCTGCG
ATATTGAAATGCCGCGCATGAATGGTTTAGAGTTACTTTCCCAACTCCAGGCCGATGAGATGCTAGCCAATCTTCCCGTG
GCCCTGTTGACCTCCCGGGGGGCCGACCGCCACCGTAAAATGGCTGCTAAATTAGGGGCCAGCGGTTACTTTACTAAGCC
TTACACCGAAAAAGACCTCCTGGATGCTGCTGGCCGGATGCTCCAAGGAGAAATTCTCCTCCCCGGTAGTGTTCGTCAGT
CTAATTCCGTTCTCTCTCGCTTTAAACAGGCCAAGCTAGCGGCCCCGGAAGCGTCCCCACCCAAGCTGGAGATGCCCGAA
AGTCATCCTCCCCGGGTGTTGATTATTGACGACTCTGTGATGGTGCGGGAAATGCTTTCCTTGACCTTCCGTAAGGCCAA
CTACATCACCGAGACGGCGCGGGATGGCCAGGACGCCTGGGAAAAACTACGGTCGGGTCTGCCCTGTGACTTGATCCTCT
GCGATATTGAAATGCCCCGCATGAACGGTATGGAGTTGCTGGATCGCCTACATGAAGACCCGGAACTCTCCCAAATTCCC
ATGGCCATGATTACCTCACGAGGCGCCCAAAAAATGCAACGGCTAGCAGCGGAGAAGGGGGCCAAGGGGTATTTTGTTAA
ACCTTATATTGAAGAGGCGTTGCTCGAAGCCAGTCAGCGACTGTTGGCCGGTGAGGTGTTATTGGATGTCAATGCTCTAG
TCGAGGACTAA

Domains

Predicted by InterproScan.

CheW-like domain (CheW)

(715-853)

Signal transducing histidine kinase, homodimeric domain (H-kinase_dim)

(362-421)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(572-708)

Response regulator receiver domain (Response_reg)

(1046-1157)

Response regulator receiver domain (Response_reg)

(885-996)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilL-C Synechocystis sp. PCC 6803

63.828

100

0.644

Multiple sequence alignment