Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   ABXS88_RS10730 Genome accession   NZ_AP031572
Coordinates   2336328..2336693 (+) Length   121 a.a.
NCBI ID   WP_353672042.1    Uniprot ID   -
Organism   Synechocystis sp. LKSZ1     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2331328..2341693
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABXS88_RS10705 (OLK001_21010) ylqF 2331403..2332251 (-) 849 WP_353672038.1 ribosome biogenesis GTPase YlqF -
  ABXS88_RS10710 (OLK001_21020) - 2332378..2333004 (+) 627 WP_353672039.1 pentapeptide repeat-containing protein -
  ABXS88_RS10715 (OLK001_21030) - 2333060..2333641 (+) 582 WP_353674806.1 Uma2 family endonuclease -
  ABXS88_RS10720 (OLK001_21040) fbp 2333643..2334701 (-) 1059 WP_353672040.1 class 1 fructose-bisphosphatase -
  ABXS88_RS10725 (OLK001_21050) - 2335024..2336241 (+) 1218 WP_353672041.1 response regulator -
  ABXS88_RS10730 (OLK001_21060) pilH 2336328..2336693 (+) 366 WP_353672042.1 response regulator Machinery gene
  ABXS88_RS10735 (OLK001_21070) - 2336727..2337296 (+) 570 WP_353672043.1 chemotaxis protein CheW -
  ABXS88_RS10740 (OLK001_21080) - 2337608..2340178 (+) 2571 Protein_2111 methyl-accepting chemotaxis protein -
  ABXS88_RS10745 (OLK001_21090) - 2340215..2340853 (+) 639 WP_353672044.1 methyl-accepting chemotaxis protein -

Sequence

Protein


Download         Length: 121 a.a.        Molecular weight: 13290.32 Da        Isoelectric Point: 4.5641

>NTDB_id=110032 ABXS88_RS10730 WP_353672042.1 2336328..2336693(+) (pilH) [Synechocystis sp. LKSZ1]
MGTALVIDDSSTERSIITEICKSLGINVTTAVSGEEALEKLAQSIPDVIVLDIVLPGRSGFEICRELKDREQTKQIPIIL
CSTKATDMDKFWGKRQGADAYITKPIDQAEFTATLKQFLTV

Nucleotide


Download         Length: 366 bp        

>NTDB_id=110032 ABXS88_RS10730 WP_353672042.1 2336328..2336693(+) (pilH) [Synechocystis sp. LKSZ1]
ATGGGCACGGCACTGGTCATCGACGATTCCTCTACGGAGCGCTCGATCATCACAGAAATTTGTAAAAGCCTAGGCATTAA
CGTTACGACAGCCGTCAGTGGTGAAGAGGCCTTGGAAAAATTGGCCCAAAGCATCCCCGATGTGATTGTCTTAGACATTG
TTCTGCCGGGACGCAGTGGCTTTGAAATTTGTCGGGAATTAAAAGACCGGGAACAGACTAAACAGATTCCCATTATTCTC
TGTTCCACCAAGGCTACCGATATGGATAAATTTTGGGGCAAGCGCCAGGGGGCGGATGCCTACATTACCAAGCCCATTGA
TCAAGCGGAATTTACGGCAACGTTAAAGCAATTCCTGACGGTGTAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(5-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

49.58

98.347

0.488

Multiple sequence alignment