Detailed information
Bioinformatically predicted
Overview
| Name | sxy/tfoX | Type | Regulator |
| Locus tag | ACMSJB_RS04845 | Genome accession | NZ_CP181479 |
| Coordinates | 1028145..1028750 (+) | Length | 201 a.a. |
| NCBI ID | WP_001202375.1 | Uniprot ID | A0A5I0N148 |
| Organism | Salmonella enterica subsp. enterica serovar Infantis strain FSIS12214921 | ||
| Function | positive regulator of competence gene (predicted from homology) Competence regulation |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 994544..1037010 | 1028145..1028750 | within | 0 |
Gene organization within MGE regions
Location: 994544..1037010
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACMSJB_RS04715 (ACMSJB_04715) | ldtD | 994584..996431 (+) | 1848 | WP_000925896.1 | L,D-transpeptidase | - |
| ACMSJB_RS04720 (ACMSJB_04720) | - | 996691..997239 (+) | 549 | WP_000357052.1 | YcbK family protein | - |
| ACMSJB_RS04725 (ACMSJB_04725) | - | 997267..997914 (+) | 648 | WP_001109471.1 | MBL fold metallo-hydrolase | - |
| ACMSJB_RS04730 (ACMSJB_04730) | - | 998012..999267 (+) | 1256 | WP_086016038.1 | IS3-like element ISSen1 family transposase | - |
| ACMSJB_RS04735 (ACMSJB_04735) | aspC | 999291..1000481 (-) | 1191 | WP_000462653.1 | aspartate transaminase | - |
| ACMSJB_RS04740 (ACMSJB_04740) | ompF | 1000666..1001757 (-) | 1092 | WP_000977709.1 | porin OmpF | - |
| ACMSJB_RS04745 (ACMSJB_04745) | asnS | 1002364..1003764 (-) | 1401 | WP_023993514.1 | asparagine--tRNA ligase | - |
| ACMSJB_RS04750 (ACMSJB_04750) | - | 1003965..1004426 (-) | 462 | WP_000762342.1 | Lrp/AsnC family transcriptional regulator | - |
| ACMSJB_RS04755 (ACMSJB_04755) | dpaL | 1004743..1005957 (+) | 1215 | WP_020438006.1 | diaminopropionate ammonia-lyase | - |
| ACMSJB_RS04760 (ACMSJB_04760) | - | 1006203..1007636 (+) | 1434 | WP_000893191.1 | alanine/glycine:cation symporter family protein | - |
| ACMSJB_RS04765 (ACMSJB_04765) | pncB | 1007717..1008919 (-) | 1203 | WP_023993513.1 | nicotinate phosphoribosyltransferase | - |
| ACMSJB_RS04770 (ACMSJB_04770) | pepN | 1009186..1011798 (+) | 2613 | WP_023993512.1 | aminopeptidase N | - |
| ACMSJB_RS04775 (ACMSJB_04775) | pyrD | 1012006..1013016 (+) | 1011 | WP_000291723.1 | quinone-dependent dihydroorotate dehydrogenase | - |
| ACMSJB_RS04780 (ACMSJB_04780) | zapC | 1013182..1013724 (+) | 543 | WP_023993511.1 | cell division protein ZapC | - |
| ACMSJB_RS04785 (ACMSJB_04785) | - | 1013721..1014830 (-) | 1110 | WP_023993510.1 | YcbX family protein | - |
| ACMSJB_RS04790 (ACMSJB_04790) | rlmKL | 1014929..1017037 (+) | 2109 | WP_023993509.1 | bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL | - |
| ACMSJB_RS04795 (ACMSJB_04795) | - | 1017050..1018957 (+) | 1908 | WP_023993508.1 | ABC transporter ATP-binding protein | - |
| ACMSJB_RS04800 (ACMSJB_04800) | pqiA | 1018972..1020225 (+) | 1254 | WP_000333152.1 | membrane integrity-associated transporter subunit PqiA | - |
| ACMSJB_RS04805 (ACMSJB_04805) | pqiB | 1020230..1021870 (+) | 1641 | WP_000433414.1 | intermembrane transport protein PqiB | - |
| ACMSJB_RS04810 (ACMSJB_04810) | pqiC | 1021867..1022430 (+) | 564 | WP_000759136.1 | membrane integrity-associated transporter subunit PqiC | - |
| ACMSJB_RS04815 (ACMSJB_04815) | rmf | 1022686..1022853 (+) | 168 | WP_001537784.1 | ribosome modulation factor | - |
| ACMSJB_RS04820 (ACMSJB_04820) | fabA | 1022953..1023471 (-) | 519 | WP_000227928.1 | bifunctional 3-hydroxydecanoyl-ACP dehydratase/trans-2-decenoyl-ACP isomerase | - |
| ACMSJB_RS04825 (ACMSJB_04825) | - | 1023540..1025300 (-) | 1761 | WP_000156457.1 | AAA family ATPase | - |
| ACMSJB_RS04830 (ACMSJB_04830) | matP | 1025486..1025938 (+) | 453 | WP_000877172.1 | macrodomain Ter protein MatP | - |
| ACMSJB_RS04835 (ACMSJB_04835) | ompA | 1026010..1027062 (-) | 1053 | WP_001670727.1 | porin OmpA | - |
| ACMSJB_RS04840 (ACMSJB_04840) | sulA | 1027419..1027928 (-) | 510 | WP_000288732.1 | SOS-induced cell division inhibitor SulA | - |
| ACMSJB_RS04845 (ACMSJB_04845) | sxy/tfoX | 1028145..1028750 (+) | 606 | WP_001202375.1 | TfoX/Sxy family DNA transformation protein | Regulator |
| ACMSJB_RS04850 (ACMSJB_04850) | yccS | 1028737..1030890 (-) | 2154 | WP_000950876.1 | YccS family putative transporter | - |
| ACMSJB_RS04855 (ACMSJB_04855) | - | 1030909..1031355 (-) | 447 | WP_023993507.1 | YccF domain-containing protein | - |
| ACMSJB_RS04860 (ACMSJB_04860) | helD | 1031479..1033533 (+) | 2055 | WP_023993506.1 | DNA helicase IV | - |
| ACMSJB_RS04865 (ACMSJB_04865) | mgsA | 1033569..1034027 (-) | 459 | WP_023993505.1 | methylglyoxal synthase | - |
| ACMSJB_RS04870 (ACMSJB_04870) | - | 1034122..1034784 (-) | 663 | WP_000847719.1 | DUF2057 family protein | - |
| ACMSJB_RS04875 (ACMSJB_04875) | - | 1034958..1035371 (+) | 414 | WP_001537782.1 | CoA-binding protein | - |
| ACMSJB_RS04880 (ACMSJB_04880) | hspQ | 1035416..1035733 (-) | 318 | WP_000561983.1 | heat shock protein HspQ | - |
| ACMSJB_RS04885 (ACMSJB_04885) | rlmI | 1035791..1037002 (-) | 1212 | WP_000140480.1 | 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI | - |
Sequence
Protein
Download Length: 201 a.a. Molecular weight: 23174.94 Da Isoelectric Point: 8.7403
>NTDB_id=1100235 ACMSJB_RS04845 WP_001202375.1 1028145..1028750(+) (sxy/tfoX) [Salmonella enterica subsp. enterica serovar Infantis strain FSIS12214921]
MRALSYDRIYKSQEYLASLGTIQYRSLFGSYSLTVEDTVFAMVANGELYLRACEESVPYCVKHPPAWLMFMKCGRPVMLN
YYRVDESLWRDQQQLVRLSKYSLDAAMKEKHSRILQHRLKDLPNMTFHLETLLNESGIKDENMLRILGAKMCWLRLRQSN
PLLTVKVLYALEGAIVGVHEAALPASRRQELADWAHSLTAG
MRALSYDRIYKSQEYLASLGTIQYRSLFGSYSLTVEDTVFAMVANGELYLRACEESVPYCVKHPPAWLMFMKCGRPVMLN
YYRVDESLWRDQQQLVRLSKYSLDAAMKEKHSRILQHRLKDLPNMTFHLETLLNESGIKDENMLRILGAKMCWLRLRQSN
PLLTVKVLYALEGAIVGVHEAALPASRRQELADWAHSLTAG
Nucleotide
Download Length: 606 bp
>NTDB_id=1100235 ACMSJB_RS04845 WP_001202375.1 1028145..1028750(+) (sxy/tfoX) [Salmonella enterica subsp. enterica serovar Infantis strain FSIS12214921]
ATGAGAGCACTCTCTTATGACAGGATCTATAAATCGCAAGAATATTTGGCCTCTTTGGGGACGATCCAGTATCGATCTTT
ATTCGGTAGCTATAGTCTGACCGTGGAGGATACCGTCTTTGCGATGGTGGCTAATGGCGAGCTTTATCTCCGCGCCTGTG
AAGAAAGCGTACCCTACTGTGTGAAGCATCCTCCCGCCTGGCTCATGTTTATGAAATGTGGACGTCCCGTTATGCTCAAC
TATTACCGGGTGGATGAAAGCCTGTGGCGCGATCAGCAGCAGCTGGTGCGTTTATCGAAGTATTCTCTTGACGCGGCAAT
GAAGGAAAAACACAGCCGTATTTTACAGCACAGACTCAAAGATCTCCCCAATATGACCTTCCATCTGGAAACATTGCTCA
ATGAGTCAGGGATAAAGGACGAAAATATGTTACGCATACTGGGCGCGAAAATGTGCTGGCTAAGGTTGCGACAAAGCAAT
CCCTTGCTGACGGTGAAAGTTTTGTATGCCCTGGAAGGCGCAATTGTCGGCGTACATGAAGCGGCGCTCCCGGCGAGTCG
TCGCCAGGAGCTTGCCGACTGGGCTCATTCGCTTACGGCTGGGTAA
ATGAGAGCACTCTCTTATGACAGGATCTATAAATCGCAAGAATATTTGGCCTCTTTGGGGACGATCCAGTATCGATCTTT
ATTCGGTAGCTATAGTCTGACCGTGGAGGATACCGTCTTTGCGATGGTGGCTAATGGCGAGCTTTATCTCCGCGCCTGTG
AAGAAAGCGTACCCTACTGTGTGAAGCATCCTCCCGCCTGGCTCATGTTTATGAAATGTGGACGTCCCGTTATGCTCAAC
TATTACCGGGTGGATGAAAGCCTGTGGCGCGATCAGCAGCAGCTGGTGCGTTTATCGAAGTATTCTCTTGACGCGGCAAT
GAAGGAAAAACACAGCCGTATTTTACAGCACAGACTCAAAGATCTCCCCAATATGACCTTCCATCTGGAAACATTGCTCA
ATGAGTCAGGGATAAAGGACGAAAATATGTTACGCATACTGGGCGCGAAAATGTGCTGGCTAAGGTTGCGACAAAGCAAT
CCCTTGCTGACGGTGAAAGTTTTGTATGCCCTGGAAGGCGCAATTGTCGGCGTACATGAAGCGGCGCTCCCGGCGAGTCG
TCGCCAGGAGCTTGCCGACTGGGCTCATTCGCTTACGGCTGGGTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| sxy/tfoX | Escherichia coli BW25113 strain K-12 |
75.879 |
99.005 |
0.751 |