Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   ABXS88_RS01335 Genome accession   NZ_AP031572
Coordinates   276020..277699 (-) Length   559 a.a.
NCBI ID   WP_353673406.1    Uniprot ID   -
Organism   Synechocystis sp. LKSZ1     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 271020..282699
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABXS88_RS01305 (OLK001_02470) - 271899..272681 (-) 783 WP_353673400.1 YdcF family protein -
  ABXS88_RS01310 (OLK001_02480) - 272699..273019 (-) 321 WP_353673401.1 hypothetical protein -
  ABXS88_RS01315 (OLK001_02490) - 273158..273718 (-) 561 WP_353673402.1 5-formyltetrahydrofolate cyclo-ligase -
  ABXS88_RS01320 (OLK001_02500) - 273931..274428 (-) 498 WP_353673403.1 DUF427 domain-containing protein -
  ABXS88_RS01325 (OLK001_02510) - 274577..275494 (+) 918 WP_353673404.1 tetratricopeptide repeat protein -
  ABXS88_RS01330 (OLK001_02520) - 275429..275881 (-) 453 WP_353673405.1 BLUF domain-containing protein -
  ABXS88_RS01335 (OLK001_02530) comA 276020..277699 (-) 1680 WP_353673406.1 phospholipase D-like domain-containing protein Machinery gene
  ABXS88_RS01340 (OLK001_02540) - 277766..278200 (+) 435 WP_353673407.1 hypothetical protein -
  ABXS88_RS01345 (OLK001_02550) - 278271..279716 (+) 1446 WP_353673408.1 phosphoglucomutase/phosphomannomutase family protein -
  ABXS88_RS01350 (OLK001_02560) dnaG 279713..281605 (-) 1893 WP_353673409.1 DNA primase -
  ABXS88_RS01355 (OLK001_02570) xth 281666..282460 (+) 795 WP_353673410.1 exodeoxyribonuclease III -

Sequence

Protein


Download         Length: 559 a.a.        Molecular weight: 61405.47 Da        Isoelectric Point: 6.7786

>NTDB_id=110018 ABXS88_RS01335 WP_353673406.1 276020..277699(-) (comA) [Synechocystis sp. LKSZ1]
MNSTGKWLKAYRGWLLVALALVVAAAIIIGAYLRDGGRLPPLPQDPQIQVYFNHNQAQGADYRDPYRQIQRPGDNLEAII
LQAINNAQSRIDLAVQELRLPRIAQALVAQKQKGRQVRVILENQYNFVVAEKIGSGATSATSDQDGDQADDRLEDYQAFL
DQNRDGQISESESAERDAIQILRQGGVPLIDDTEDGSKGTGLMHHKFLVVDGQTVIVTSANFTLSDQHGDYSRPATRGNA
NNLLVIQSPALADIFSEEFNLMWGDGPGGRADSRFGLKKPHRSAQTVTVGQSTVTVKFSPDSRQLPWSETSNGLIARYLN
TAQKSIDLALFVFSEQPLVDVLQQPFQRGVEIKTLIDPGFAFRSYSEGLDLLGVSLREQCRVEAGNRPWPLAASFVGIPT
LVEGDKLHHKLAVIDVQTVITGSHNWSPSANLQNDETLLILQNPKIAAHYQRELERLQANAQWGLPEGLKRKIKAQERAC
GQNVTPQPSPLAIATTAPLVNLNTATQTELESLPGIGPSLAKKIITARQNQPFTGLEDLERVPGLKAKKINALRGQVIW

Nucleotide


Download         Length: 1680 bp        

>NTDB_id=110018 ABXS88_RS01335 WP_353673406.1 276020..277699(-) (comA) [Synechocystis sp. LKSZ1]
GTGAATTCAACAGGAAAATGGTTAAAAGCCTATCGCGGCTGGCTACTGGTGGCCCTGGCCCTAGTTGTAGCGGCCGCTAT
TATCATCGGGGCCTATCTGCGAGACGGGGGCCGCTTACCACCCCTGCCCCAAGATCCCCAGATCCAAGTGTATTTCAACC
ATAACCAGGCCCAGGGGGCCGATTATCGAGACCCCTACCGCCAAATCCAACGGCCAGGGGATAATCTTGAAGCGATTATT
CTCCAGGCCATTAACAATGCCCAAAGTCGCATAGACCTGGCGGTTCAAGAATTACGATTGCCCCGTATTGCCCAGGCCTT
GGTGGCCCAGAAACAAAAAGGCCGTCAGGTGCGGGTAATTTTAGAAAATCAGTACAATTTTGTAGTGGCGGAAAAAATAG
GCTCAGGGGCCACCTCTGCCACTTCGGATCAAGACGGTGACCAAGCGGATGACCGTCTGGAGGATTACCAGGCCTTTCTG
GATCAAAACAGGGATGGCCAGATTAGTGAGTCAGAAAGTGCAGAGCGCGATGCCATTCAAATCCTACGCCAGGGAGGAGT
CCCCCTCATTGACGATACGGAAGATGGCTCCAAGGGAACGGGTCTGATGCACCATAAATTTTTGGTCGTGGACGGCCAGA
CGGTGATCGTCACCTCTGCTAACTTCACCCTCAGCGATCAGCACGGGGATTACAGCCGCCCAGCTACTCGCGGCAATGCG
AATAACCTCCTGGTGATCCAATCGCCGGCCCTAGCGGACATTTTCTCAGAGGAATTTAATTTGATGTGGGGGGATGGCCC
TGGTGGCCGGGCAGACAGTCGTTTTGGCTTGAAGAAACCGCACCGGTCGGCCCAAACTGTTACTGTCGGTCAGAGTACCG
TTACCGTCAAATTTTCCCCCGATTCTCGACAATTGCCCTGGTCAGAAACCAGTAATGGCTTAATCGCTCGCTACCTCAAT
ACAGCTCAAAAATCGATAGATCTTGCCCTATTTGTGTTTAGTGAACAGCCCTTAGTGGATGTTCTGCAACAGCCCTTTCA
ACGGGGAGTCGAAATTAAAACCTTGATTGATCCTGGTTTTGCCTTTCGCTCCTACAGTGAGGGACTGGATCTATTGGGGG
TAAGCCTGCGGGAACAATGCCGTGTCGAAGCTGGCAACCGGCCCTGGCCCTTGGCCGCTTCCTTTGTGGGAATTCCAACC
CTAGTAGAGGGAGATAAACTCCACCATAAGTTGGCAGTAATTGATGTCCAGACTGTCATTACTGGCTCCCACAACTGGTC
TCCCAGTGCCAATCTGCAAAACGACGAGACCCTCCTAATCTTGCAAAATCCTAAAATTGCGGCCCATTATCAGCGGGAAC
TGGAACGCCTCCAGGCCAATGCCCAGTGGGGTCTCCCAGAGGGATTAAAACGAAAAATTAAGGCCCAAGAAAGGGCCTGT
GGCCAGAATGTAACTCCCCAGCCCAGTCCTTTAGCCATTGCAACGACAGCGCCCCTGGTTAATCTCAACACCGCAACTCA
GACGGAACTAGAAAGCCTACCCGGCATTGGCCCGAGTCTGGCGAAGAAGATTATTACCGCTCGCCAAAATCAACCTTTTA
CCGGCCTAGAAGACTTGGAACGGGTACCGGGGCTCAAGGCTAAGAAAATTAACGCCCTGCGCGGCCAGGTGATCTGGTAG

Domains

Predicted by InterproScan.

PLD-like domain (PLDc_2)

(316-457)

PLD-like domain (PLDc_2)

(80-263)

Helix-hairpin-helix motif (HHH_3)

(498-557)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Synechocystis sp. PCC 6803

59.858

100

0.603

Multiple sequence alignment