Detailed information    

insolico Bioinformatically predicted

Overview

Name   priA   Type   Machinery gene
Locus tag   ABXS94_RS12150 Genome accession   NZ_AP031566
Coordinates   2519219..2521441 (+) Length   740 a.a.
NCBI ID   WP_004975947.1    Uniprot ID   A0AAP4HDS9
Organism   Acinetobacter towneri strain PT23-B2     
Function   DNA puliing through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2514219..2526441
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABXS94_RS12125 (PT23B2_23410) tusA 2514386..2514643 (-) 258 WP_004975955.1 sulfurtransferase TusA -
  ABXS94_RS12130 (PT23B2_23420) - 2514841..2515680 (+) 840 WP_004975954.1 CBS domain-containing protein -
  ABXS94_RS12135 (PT23B2_23430) lnt 2515677..2517233 (+) 1557 WP_004975952.1 apolipoprotein N-acyltransferase -
  ABXS94_RS12140 (PT23B2_23440) gspG 2517350..2517784 (-) 435 WP_004975950.1 type II secretion system major pseudopilin GspG -
  ABXS94_RS12145 (PT23B2_23450) gspF 2517861..2519066 (-) 1206 WP_004975948.1 type II secretion system inner membrane protein GspF -
  ABXS94_RS12150 (PT23B2_23460) priA 2519219..2521441 (+) 2223 WP_004975947.1 primosomal protein N' Machinery gene
  ABXS94_RS12155 (PT23B2_23470) - 2521514..2523355 (+) 1842 WP_353675231.1 monovalent cation:proton antiporter-2 (CPA2) family protein -
  ABXS94_RS12160 (PT23B2_23480) hslO 2523406..2524281 (+) 876 WP_353675232.1 Hsp33 family molecular chaperone HslO -
  ABXS94_RS12165 (PT23B2_23490) - 2524539..2525003 (+) 465 WP_004975938.1 DUF2147 domain-containing protein -
  ABXS94_RS12170 (PT23B2_23500) - 2525213..2525674 (+) 462 WP_353675233.1 DUF2147 domain-containing protein -
  ABXS94_RS12175 (PT23B2_23510) - 2526057..2526392 (+) 336 WP_004975930.1 chaperone modulator CbpM -

Sequence

Protein


Download         Length: 740 a.a.        Molecular weight: 83780.00 Da        Isoelectric Point: 8.7648

>NTDB_id=110011 ABXS94_RS12150 WP_004975947.1 2519219..2521441(+) (priA) [Acinetobacter towneri strain PT23-B2]
MPDSTLDPQPVYRIRVAVPVYLYDCFDYMLSAAQYQQAEVGARVLVSFGRQNLVGIIVEKLALDTPIDPRFKLKAISELL
DEQAILDPKVLTLLTWSAQYYQFPIGEVMQSALPSLLRQAKPYNLLARTWKLLDAHAEAKITRSEKQQEAYKILKLHPSG
TSENILNLAGIETATLKALANKEICACVLEAQDFSPMPVTLAQMPLTPNPDQKKAIDSVLKVRQQYKAFLLDGLTGSGKT
EVYLHIMHEVLKQGKQVLVLVPEIGLTPQTISRFQSRFHCHIALLHSGLNDSKRLQAWQAAQTGKASIILGTRSAIYTPL
PNLGLIILDEEHDLSFKQQEGFRYHARDVALYRAHLENCPVILGSATPSIDSYALVDQGKMQCLELNQRAGTALMPKIHL
IDLKIAKKQHGISQQLIDEIKKRLAKKEQVLVFLNRRGYAPVLICESCAWQAKCPNCDANFTLHHQPYTHLHCHHCGTIH
RKPEQCPACNHAELKPIGMGTAKVEDSLNELFPNVDVIRVDRDSTSRVGSWQKIYDRIQRSEPLILLGTQMLAKGHHFPY
VTLVAILDIDSGLLSVDIRAPERTAQLIVQVAGRAGRGEHKGDVYLQSVRPDHPLLTTLVEGDYRKFAKQSLKERKAAQL
PPYRYSALIRCESKSQELNQQFLQQHAQWLREHSEQLIEIWGPIPAPMERKAGRFHAHMVLLSKDRARLHFYIRNWWQNM
LHEKPSSMKLSLDIDPQEFS

Nucleotide


Download         Length: 2223 bp        

>NTDB_id=110011 ABXS94_RS12150 WP_004975947.1 2519219..2521441(+) (priA) [Acinetobacter towneri strain PT23-B2]
ATGCCAGATTCCACTTTAGACCCACAGCCTGTTTATCGTATTCGAGTGGCTGTACCCGTATATCTTTACGACTGCTTCGA
TTATATGCTCAGTGCAGCACAATATCAGCAAGCAGAAGTGGGCGCGCGGGTCTTGGTTTCTTTTGGTCGGCAAAACTTGG
TCGGAATTATTGTCGAAAAACTGGCACTCGACACCCCAATTGATCCACGTTTTAAACTCAAAGCCATTAGCGAACTGTTA
GATGAGCAAGCGATTTTAGACCCTAAAGTTTTAACTTTGTTGACATGGTCGGCACAATATTATCAATTCCCGATTGGTGA
AGTGATGCAAAGTGCCTTACCTAGCTTATTGCGCCAAGCCAAACCCTATAATTTATTGGCACGTACTTGGAAATTGTTGG
ATGCACATGCCGAAGCTAAAATTACACGCTCAGAAAAACAACAAGAAGCCTATAAAATTTTAAAGCTGCATCCTTCGGGA
ACTTCTGAAAATATTTTAAATTTGGCAGGCATTGAAACAGCAACCCTAAAAGCCTTGGCGAATAAAGAAATTTGCGCATG
TGTTTTGGAAGCCCAAGATTTTAGCCCAATGCCAGTGACTTTGGCGCAAATGCCTTTAACCCCTAATCCAGATCAGAAAA
AAGCCATCGACAGCGTACTTAAAGTACGGCAGCAATATAAGGCATTTTTACTGGATGGTTTAACGGGTAGCGGTAAAACT
GAAGTGTACTTACACATCATGCATGAGGTACTAAAACAGGGCAAACAAGTGTTGGTGTTAGTACCTGAAATTGGTCTAAC
GCCACAAACCATTAGCCGTTTCCAATCGCGTTTTCACTGCCACATCGCCCTCTTACATTCAGGTTTAAATGATTCCAAGC
GTTTGCAGGCGTGGCAAGCCGCACAAACGGGCAAAGCCTCGATTATTTTAGGTACACGTTCTGCGATTTATACCCCATTG
CCAAATTTAGGCTTGATTATTTTAGATGAAGAACACGACCTGTCTTTTAAACAGCAGGAAGGTTTTCGCTACCATGCCCG
TGATGTTGCGCTCTATCGTGCCCATCTGGAAAATTGCCCTGTTATTTTAGGTTCGGCAACTCCAAGCATTGACAGCTATG
CACTAGTCGATCAAGGCAAAATGCAATGTCTGGAATTAAATCAACGCGCGGGCACGGCACTCATGCCCAAAATCCACCTG
ATTGATTTAAAAATTGCCAAAAAACAGCACGGTATTAGCCAACAATTGATTGATGAAATCAAAAAACGCTTGGCTAAAAA
AGAACAAGTTTTGGTGTTTTTAAACCGACGCGGCTATGCACCCGTATTGATTTGTGAGAGCTGTGCATGGCAAGCCAAAT
GCCCGAATTGTGATGCCAACTTTACCTTGCATCATCAACCTTATACACATTTGCATTGCCACCACTGCGGTACGATTCAT
CGTAAACCTGAGCAATGCCCTGCCTGCAACCATGCAGAACTCAAACCAATTGGCATGGGCACTGCCAAAGTCGAAGACAG
TTTAAACGAGCTGTTTCCCAATGTAGATGTGATTCGGGTAGATCGTGACTCAACCAGTCGTGTTGGCAGTTGGCAAAAAA
TTTATGACCGTATTCAACGCAGCGAACCACTGATTTTATTGGGCACGCAAATGCTGGCCAAAGGGCATCATTTTCCGTAT
GTGACATTGGTGGCAATTTTAGATATTGATTCAGGCTTACTTAGTGTGGATATTCGCGCACCTGAACGCACGGCTCAACT
GATTGTGCAAGTGGCGGGACGTGCAGGGCGTGGTGAGCATAAAGGTGATGTTTATTTGCAAAGTGTGCGTCCTGATCATC
CACTTCTCACCACGTTGGTCGAGGGAGATTACCGCAAGTTCGCCAAACAAAGTTTAAAAGAACGCAAAGCTGCACAATTA
CCGCCTTATCGTTACAGTGCTTTGATTCGCTGTGAATCTAAAAGTCAGGAATTAAACCAGCAATTTTTACAACAACATGC
ACAATGGCTTAGAGAACATTCAGAACAATTAATTGAAATTTGGGGGCCGATTCCTGCGCCAATGGAACGTAAAGCAGGAC
GTTTCCATGCACACATGGTGTTGTTGTCTAAAGATCGGGCACGCTTACATTTTTATATCAGGAACTGGTGGCAAAATATG
TTGCATGAAAAGCCATCCAGCATGAAACTAAGTTTAGATATAGATCCGCAAGAATTTAGCTAA

Domains

Predicted by InterproScan.

3DNA-binding domain (3BD) (PriA_3primeBD)

(15-114)

Type III restriction enzyme, res subunit (ResIII)

(207-369)

Primosomal protein N C-terminal domain (PriA_C)

(642-736)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  priA Acinetobacter baumannii D1279779

73.414

100

0.735

Multiple sequence alignment