Detailed information
Bioinformatically predicted
Overview
| Name | sinR | Type | Regulator |
| Locus tag | ACMS1Y_RS11540 | Genome accession | NZ_CP181431 |
| Coordinates | 2281119..2281454 (+) | Length | 111 a.a. |
| NCBI ID | WP_024422969.1 | Uniprot ID | - |
| Organism | Bacillus safensis strain BS22LVI | ||
| Function | repression of rok; repression of degU; repression of spo0A (predicted from homology) Competence regulation |
||
Genomic Context
Location: 2276119..2286454
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACMS1Y_RS11520 | gcvT | 2276606..2277704 (-) | 1099 | Protein_2227 | glycine cleavage system aminomethyltransferase GcvT | - |
| ACMS1Y_RS11525 | - | 2278256..2279926 (+) | 1671 | WP_197172670.1 | DEAD/DEAH box helicase | - |
| ACMS1Y_RS11530 | - | 2279941..2280738 (+) | 798 | WP_197172669.1 | YqhG family protein | - |
| ACMS1Y_RS11535 | - | 2280921..2281085 (+) | 165 | WP_073206269.1 | anti-repressor SinI family protein | - |
| ACMS1Y_RS11540 | sinR | 2281119..2281454 (+) | 336 | WP_024422969.1 | transcriptional regulator SinR | Regulator |
| ACMS1Y_RS11545 | tasA | 2281522..2282322 (-) | 801 | WP_024422970.1 | biofilm matrix protein TasA | - |
| ACMS1Y_RS11550 | sipW | 2282377..2282949 (-) | 573 | WP_024422971.1 | signal peptidase I SipW | - |
| ACMS1Y_RS11555 | tapA | 2283002..2283529 (-) | 528 | WP_098677430.1 | amyloid fiber anchoring/assembly protein TapA | - |
| ACMS1Y_RS11560 | - | 2283829..2284107 (+) | 279 | WP_171464609.1 | DUF3889 domain-containing protein | - |
| ACMS1Y_RS11565 | - | 2284141..2284335 (-) | 195 | WP_056767455.1 | YqzE family protein | - |
| ACMS1Y_RS11570 | - | 2284402..2284785 (-) | 384 | WP_197172668.1 | competence type IV pilus minor pilin ComGG | - |
| ACMS1Y_RS11575 | comGF | 2284782..2285534 (-) | 753 | WP_415315994.1 | competence type IV pilus minor pilin ComGF | - |
| ACMS1Y_RS11580 | comGD | 2285518..2285964 (-) | 447 | WP_197172667.1 | competence type IV pilus minor pilin ComGD | - |
| ACMS1Y_RS11585 | comGC | 2285957..2286250 (-) | 294 | WP_024422977.1 | competence type IV pilus major pilin ComGC | Machinery gene |
Sequence
Protein
Download Length: 111 a.a. Molecular weight: 12978.56 Da Isoelectric Point: 5.0026
>NTDB_id=1100101 ACMS1Y_RS11540 WP_024422969.1 2281119..2281454(+) (sinR) [Bacillus safensis strain BS22LVI]
MIGQRIKQYRNEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLNEKDETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQIWRKKQEEE
MIGQRIKQYRNEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLNEKDETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQIWRKKQEEE
Nucleotide
Download Length: 336 bp
>NTDB_id=1100101 ACMS1Y_RS11540 WP_024422969.1 2281119..2281454(+) (sinR) [Bacillus safensis strain BS22LVI]
TTGATTGGCCAGCGTATTAAACAATACCGCAATGAAAAAGGCTACTCACTATCAGAACTGGCCGAAAAGGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAAAGAAACTTGCAAACAAACCCCTCCATTCAATTTCTTGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACACTTTTAAACGAAAAAGATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAAAAA
CTAGTTCGAGATGCAATGACATCAGGGGTTTCGAAAAAGCAATTTCGTGAATTTTTAGATTATCAAATCTGGAGAAAAAA
GCAAGAAGAGGAGTAA
TTGATTGGCCAGCGTATTAAACAATACCGCAATGAAAAAGGCTACTCACTATCAGAACTGGCCGAAAAGGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAAAGAAACTTGCAAACAAACCCCTCCATTCAATTTCTTGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACACTTTTAAACGAAAAAGATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAAAAA
CTAGTTCGAGATGCAATGACATCAGGGGTTTCGAAAAAGCAATTTCGTGAATTTTTAGATTATCAAATCTGGAGAAAAAA
GCAAGAAGAGGAGTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| sinR | Bacillus subtilis subsp. subtilis str. 168 |
94.595 |
100 |
0.946 |