Detailed information    

insolico Bioinformatically predicted

Overview

Name   tonB2   Type   Machinery gene
Locus tag   ABXS94_RS11605 Genome accession   NZ_AP031566
Coordinates   2406084..2406941 (-) Length   285 a.a.
NCBI ID   WP_171062604.1    Uniprot ID   -
Organism   Acinetobacter towneri strain PT23-B2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2401084..2411941
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABXS94_RS11590 (PT23B2_22360) miaB 2402778..2404232 (+) 1455 WP_004976194.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -
  ABXS94_RS11595 (PT23B2_22370) - 2404272..2405345 (+) 1074 WP_004976193.1 PhoH family protein -
  ABXS94_RS11600 (PT23B2_22380) ybeY 2405389..2405871 (+) 483 WP_004976192.1 rRNA maturation RNase YbeY -
  ABXS94_RS11605 (PT23B2_22390) tonB2 2406084..2406941 (-) 858 WP_171062604.1 TonB family protein Machinery gene
  ABXS94_RS11610 (PT23B2_22400) - 2407217..2407891 (+) 675 WP_004976182.1 hypothetical protein -
  ABXS94_RS11615 (PT23B2_22410) - 2408037..2408750 (+) 714 WP_004976176.1 DUF3108 domain-containing protein -
  ABXS94_RS11620 (PT23B2_22420) - 2408879..2409454 (+) 576 WP_004976172.1 xanthine phosphoribosyltransferase -
  ABXS94_RS11625 (PT23B2_22430) - 2409717..2410118 (+) 402 WP_353675775.1 hypothetical protein -
  ABXS94_RS11630 (PT23B2_22440) - 2410177..2410368 (-) 192 WP_346813428.1 hypothetical protein -
  ABXS94_RS11635 (PT23B2_22450) wrbA 2410938..2411534 (-) 597 WP_026438329.1 NAD(P)H:quinone oxidoreductase -

Sequence

Protein


Download         Length: 285 a.a.        Molecular weight: 32209.53 Da        Isoelectric Point: 6.2940

>NTDB_id=110010 ABXS94_RS11605 WP_171062604.1 2406084..2406941(-) (tonB2) [Acinetobacter towneri strain PT23-B2]
MPSTQDWWKDPIFAAALLVAAVLHALILAVQFAAPQQSDAAVKEIAVSVRMSDAKVEDADFLAQADQQGSGTFREEHRMS
SDMPAPMTEQSAGEQQLESLERMQQQRELNFEEKVLMTTLSWQKQAAENQRKKAMQELNSQFQAKAAMVASIEAQYLQRQ
QNFSRQQKIKTIDGIQAKQDNTAGYMEKFRQKVEFYGNRYYPEQAKAQNLAGEVRLMVILNNNGGIRAIRLIESSGHAML
DEAAKASVRKAAPFGAFDAKMKDISELRIVRTWRFDPAEAEFEVR

Nucleotide


Download         Length: 858 bp        

>NTDB_id=110010 ABXS94_RS11605 WP_171062604.1 2406084..2406941(-) (tonB2) [Acinetobacter towneri strain PT23-B2]
ATGCCTTCTACGCAAGATTGGTGGAAAGATCCTATTTTTGCTGCAGCGTTGCTGGTGGCTGCTGTATTGCACGCATTAAT
TTTGGCCGTGCAGTTTGCTGCACCGCAACAAAGCGATGCTGCGGTCAAAGAGATTGCGGTATCGGTACGCATGAGCGATG
CAAAAGTTGAAGATGCAGATTTCTTAGCCCAAGCCGATCAGCAAGGTTCAGGTACGTTCCGTGAAGAACATCGCATGTCG
AGTGATATGCCTGCACCCATGACTGAACAAAGTGCAGGGGAGCAGCAATTGGAAAGTTTAGAGCGTATGCAGCAACAGCG
TGAATTAAACTTTGAAGAAAAAGTATTGATGACCACGCTCAGTTGGCAAAAACAGGCTGCAGAAAATCAGCGCAAAAAAG
CCATGCAGGAGTTGAATAGCCAATTCCAAGCTAAGGCTGCCATGGTCGCCAGTATTGAAGCGCAATATTTACAACGCCAA
CAAAATTTTAGCCGTCAGCAAAAAATTAAAACCATCGATGGGATTCAGGCCAAGCAAGACAACACCGCTGGTTATATGGA
AAAATTCCGTCAAAAAGTCGAATTTTATGGTAACCGTTATTATCCAGAACAAGCCAAAGCACAGAATTTGGCAGGCGAAG
TACGTTTAATGGTGATTTTGAACAACAATGGTGGGATTCGTGCCATTCGTTTAATTGAAAGTTCAGGACATGCCATGCTA
GATGAAGCAGCCAAAGCTTCGGTGCGTAAAGCCGCACCTTTTGGTGCATTTGATGCCAAAATGAAAGATATTTCTGAATT
GCGGATTGTACGGACGTGGCGTTTTGACCCTGCTGAAGCTGAGTTTGAGGTGCGCTAG

Domains

Predicted by InterproScan.

Gram-negative bacterial TonB protein C-terminal (TonB_C)

(198-275)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tonB2 Acinetobacter baumannii D1279779

72.043

97.895

0.705

Multiple sequence alignment