Detailed information    

insolico Bioinformatically predicted

Overview


Name   spo0A   Type   Regulator
Locus tag   ACMS1Y_RS11345 Genome accession   NZ_CP181431
Coordinates   2246187..2246990 (-) Length   267 a.a.
NCBI ID   WP_024422935.1    Uniprot ID   A0AAX0Z9Q1
Organism   Bacillus safensis strain BS22LVI     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context


Location: 2241187..2251990
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACMS1Y_RS11325 - 2243391..2243627 (+) 237 WP_024422931.1 DUF2627 domain-containing protein -
  ACMS1Y_RS11330 - 2243664..2244401 (-) 738 WP_024422932.1 glycerophosphodiester phosphodiesterase -
  ACMS1Y_RS11335 - 2244631..2245731 (-) 1101 WP_024422933.1 Rap family tetratricopeptide repeat protein -
  ACMS1Y_RS11340 - 2245719..2245916 (-) 198 WP_024422934.1 hypothetical protein -
  ACMS1Y_RS11345 spo0A 2246187..2246990 (-) 804 WP_024422935.1 sporulation transcription factor Spo0A Regulator
  ACMS1Y_RS11350 spoIVB 2247275..2248552 (-) 1278 WP_025092993.1 SpoIVB peptidase -
  ACMS1Y_RS11355 recN 2248753..2250486 (-) 1734 WP_025092992.1 DNA repair protein RecN Machinery gene
  ACMS1Y_RS11360 ahrC 2250520..2250969 (-) 450 WP_024422938.1 transcriptional regulator AhrC/ArgR -

Sequence


Protein


Download         Length: 267 a.a.        Molecular weight: 29932.46 Da        Isoelectric Point: 6.3918

>NTDB_id=1100099 ACMS1Y_RS11345 WP_024422935.1 2246187..2246990(-) (spo0A) [Bacillus safensis strain BS22LVI]
MEKIKVCVADDNRELVGLLTEYIEGQEDMEVLGVAYNGQECLTLFKDKEPDVLLLDIIMPHLDGLAVLERLRENNEMTKQ
PSVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLVGHIRQVSGNGTQVTHRSSSIQNSVLRNKPEPKRKNLDASITTI
IHEIGVPAHIKGYLYLREAISMVYNDIELLGSITKVLYPDIAKKFNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTV
SMSKAKPTNSEFIAMVADRLRLEHRAS

Nucleotide


Download         Length: 804 bp        

>NTDB_id=1100099 ACMS1Y_RS11345 WP_024422935.1 2246187..2246990(-) (spo0A) [Bacillus safensis strain BS22LVI]
GTGGAGAAAATTAAAGTGTGTGTAGCTGATGACAATCGAGAGCTTGTTGGCCTTTTGACAGAGTATATTGAGGGACAGGA
AGATATGGAAGTACTTGGCGTGGCGTATAATGGTCAGGAATGCCTGACATTATTTAAAGATAAAGAGCCCGACGTTCTCC
TCTTAGACATTATTATGCCTCATTTAGACGGTCTTGCTGTACTAGAACGCCTCCGTGAAAACAATGAAATGACAAAACAG
CCAAGTGTGATTATGCTAACGGCATTTGGACAAGAAGATGTCACGAAAAAAGCAGTTGATTTAGGCGCATCCTATTTCAT
TTTAAAGCCATTTGATATGGAAAACCTAGTAGGTCATATTCGTCAAGTCAGTGGAAACGGCACACAAGTTACCCATCGCT
CTTCATCAATCCAAAACAGTGTTCTTCGTAACAAACCTGAACCGAAACGTAAAAACTTAGATGCGAGCATTACGACCATC
ATTCATGAGATTGGCGTGCCCGCTCATATTAAAGGCTATTTATACTTAAGAGAAGCCATTTCTATGGTGTACAATGACAT
TGAGCTTCTCGGAAGCATCACTAAAGTGTTGTACCCAGACATTGCAAAGAAATTTAACACGACTGCCAGCAGGGTAGAAC
GAGCGATTCGTCATGCCATTGAAGTCGCTTGGAGCAGAGGAAACATTGATTCCATTTCCTCACTCTTTGGTTATACTGTC
AGCATGTCAAAAGCGAAACCAACCAATTCAGAATTTATTGCCATGGTAGCTGATCGTTTGCGTTTAGAGCATAGAGCAAG
CTAG


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

88.06

100

0.884


Multiple sequence alignment