Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   ACMS1Y_RS07115 Genome accession   NZ_CP181431
Coordinates   1418929..1419207 (+) Length   92 a.a.
NCBI ID   WP_024424746.1    Uniprot ID   A0AAP7QQG0
Organism   Bacillus safensis strain BS22LVI     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1413929..1424207
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACMS1Y_RS07090 - 1414021..1414296 (-) 276 WP_024424743.1 hypothetical protein -
  ACMS1Y_RS07095 - 1414440..1416059 (+) 1620 WP_197172814.1 ABC-F family ATP-binding cassette domain-containing protein -
  ACMS1Y_RS07100 - 1416099..1417331 (-) 1233 WP_197172815.1 aminopeptidase -
  ACMS1Y_RS07105 - 1417439..1417570 (-) 132 WP_003210922.1 protein YkpC -
  ACMS1Y_RS07110 mreBH 1417645..1418652 (-) 1008 WP_024424745.1 rod-share determining protein MreBH -
  ACMS1Y_RS07115 abrB 1418929..1419207 (+) 279 WP_024424746.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  ACMS1Y_RS07120 - 1419353..1420663 (+) 1311 WP_197172816.1 ATP-binding protein -
  ACMS1Y_RS07125 - 1420668..1421504 (+) 837 WP_122631281.1 gamma-glutamylcyclotransferase -
  ACMS1Y_RS07130 - 1421542..1422210 (+) 669 WP_008345123.1 potassium channel family protein -
  ACMS1Y_RS07135 ade 1422472..1424199 (+) 1728 WP_197172817.1 adenine deaminase -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 10306.01 Da        Isoelectric Point: 4.6909

>NTDB_id=1100093 ACMS1Y_RS07115 WP_024424746.1 1418929..1419207(+) (abrB) [Bacillus safensis strain BS22LVI]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSMEFFIDGDKIVLKKYQPEGVCLMTGEITSENHEYGNGQITLSAEGAE
LLLKELQEALQK

Nucleotide


Download         Length: 279 bp        

>NTDB_id=1100093 ACMS1Y_RS07115 WP_024424746.1 1418929..1419207(+) (abrB) [Bacillus safensis strain BS22LVI]
TTGAAATCTATCGGAGTCGTAAGAAAAGTAGACGAACTAGGGCGTATTGTGATGCCAATCGAATTGAGAAGAGCACTTGA
TATCGCTATTAAAGACAGTATGGAATTTTTTATAGATGGAGATAAAATCGTCTTGAAAAAATATCAGCCAGAGGGCGTTT
GTCTCATGACTGGTGAGATTACATCAGAGAACCATGAATATGGAAATGGTCAAATTACATTAAGCGCTGAAGGCGCAGAA
CTGCTGTTAAAAGAGCTGCAAGAAGCTCTTCAGAAGTAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

54.945

98.913

0.543

Multiple sequence alignment