Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   ACLZHR_RS08105 Genome accession   NZ_CP181399
Coordinates   1554371..1554811 (-) Length   146 a.a.
NCBI ID   WP_176343517.1    Uniprot ID   -
Organism   Priestia aryabhattai strain C_CMRP_4_3_1     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1549371..1559811
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLZHR_RS08080 (ACLZHR_08080) - 1549492..1550007 (+) 516 WP_033579937.1 enoyl-CoA hydratase/isomerase family protein -
  ACLZHR_RS08085 (ACLZHR_08085) - 1550147..1550272 (+) 126 WP_016765178.1 hypothetical protein -
  ACLZHR_RS08090 (ACLZHR_08090) helD 1550516..1552834 (+) 2319 WP_116514553.1 RNA polymerase recycling motor HelD -
  ACLZHR_RS08095 (ACLZHR_08095) - 1553235..1553825 (+) 591 WP_116514552.1 CPBP family intramembrane glutamic endopeptidase -
  ACLZHR_RS08100 (ACLZHR_08100) comJ 1553928..1554335 (-) 408 WP_028411020.1 competence protein ComJ -
  ACLZHR_RS08105 (ACLZHR_08105) nucA/comI 1554371..1554811 (-) 441 WP_176343517.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  ACLZHR_RS08110 (ACLZHR_08110) - 1555190..1555450 (+) 261 WP_013058561.1 metal-sensitive transcriptional regulator -
  ACLZHR_RS08115 (ACLZHR_08115) - 1555607..1557556 (+) 1950 WP_033579941.1 FUSC family protein -
  ACLZHR_RS08120 (ACLZHR_08120) - 1557592..1558410 (-) 819 WP_033579942.1 squalene/phytoene synthase family protein -
  ACLZHR_RS08125 (ACLZHR_08125) - 1558736..1559407 (+) 672 WP_409405508.1 response regulator transcription factor -

Sequence

Protein


Download         Length: 146 a.a.        Molecular weight: 16032.88 Da        Isoelectric Point: 4.4411

>NTDB_id=1099998 ACLZHR_RS08105 WP_176343517.1 1554371..1554811(-) (nucA/comI) [Priestia aryabhattai strain C_CMRP_4_3_1]
MSTYGKKLMASIFIIIACVLGFIGHAAFLAPEKTEAEVNYDATLYFPLDRYPETGDHIRDAIAAGHSSVCTIDRDGAEAN
REESLKGYPTKTGYDRDEWPMAMCEEGGAGADIRYISPSDNRGAGSWVGNQLEQYPDGTRVQFIVQ

Nucleotide


Download         Length: 441 bp        

>NTDB_id=1099998 ACLZHR_RS08105 WP_176343517.1 1554371..1554811(-) (nucA/comI) [Priestia aryabhattai strain C_CMRP_4_3_1]
ATGAGTACATACGGGAAAAAATTAATGGCAAGTATATTCATTATCATTGCATGCGTTTTAGGGTTTATAGGACATGCAGC
GTTTTTAGCTCCTGAAAAAACGGAAGCCGAAGTAAACTATGATGCAACGCTTTATTTTCCACTGGACCGATATCCTGAAA
CGGGTGATCATATTCGCGACGCGATTGCCGCTGGTCACTCTTCCGTTTGCACAATTGATCGCGACGGTGCTGAAGCGAAC
CGAGAAGAATCCCTGAAAGGATATCCGACAAAAACAGGTTATGACCGTGATGAATGGCCAATGGCTATGTGCGAAGAAGG
CGGAGCAGGAGCTGACATTCGCTATATTTCACCTTCTGATAACCGCGGAGCCGGCTCATGGGTTGGAAATCAGTTAGAAC
AGTATCCAGATGGTACACGCGTACAATTTATCGTGCAATAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(52-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

65.079

86.301

0.562

Multiple sequence alignment