Detailed information NTG1099966

Bioinformatically predicted

Overview

• Name: pilA
• Type: Machinery gene
• Locus tag: ACNFWM_RS20740
• Genome accession: NZ_CP181388
• Coordinates: 4393710..4394837 (+)
• Length: 375 a.a.
• NCBI ID: WP_132648645.1
• Uniprot ID: A0A4R2MMT5
• Organism: Rubrivivax gelatinosus isolate YF10
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4388710..4399837

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACNFWM_RS20710	prfA	4388973..4390067 (-)	1095	WP_132648650.1	peptide chain release factor 1	-
ACNFWM_RS20715	hemA	4390132..4391427 (-)	1296	WP_132648649.1	glutamyl-tRNA reductase	-
ACNFWM_RS20720	-	4391517..4391798 (+)	282	WP_132648648.1	hypothetical protein	-
ACNFWM_RS20725	miaB	4391808..4393142 (-)	1335	WP_132648647.1	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	-
ACNFWM_RS20730	-	4393144..4393524 (-)	381	WP_132648646.1	hypothetical protein	-
ACNFWM_RS20740	pilA	4393710..4394837 (+)	1128	WP_132648645.1	signal recognition particle-docking protein FtsY	Machinery gene
ACNFWM_RS20745	ffh	4395119..4396486 (-)	1368	WP_132648644.1	signal recognition particle protein	-
ACNFWM_RS20750	-	4396532..4397350 (+)	819	WP_132648643.1	cytochrome C assembly family protein	-
ACNFWM_RS20755	-	4397347..4397580 (+)	234	WP_132648642.1	PP0621 family protein	-
ACNFWM_RS20760	-	4397591..4399459 (+)	1869	WP_132648641.1	sensor histidine kinase	-

Sequence

Protein

• Length: 375 a.a.
• Molecular weight: 39432.31 Da
• Isoelectric Point: 5.0501

>NTDB_id=1099966 ACNFWM_RS20740 WP_132648645.1 4393710..4394837(+) (pilA) [Rubrivivax gelatinosus isolate YF10]
MFSFFKKKVTPAPAAPVEPTPAEASDQAPVLSDDELERAALAAAPEPEALPEPAPLPLDAAPVAEVPAAAEPRSRWLDRL
KLGLRKTGSSLTQVFTGTKIDDALYEDLESALLVADAGVGATEYLLQDLKRRVKEAKATEPAVVKALLADAVAELLAPLQ
KPLAIGQAMPTVVMVAGVNGAGKTTTIGKLTRHLAESDRRVLLAAADTFRAAAREQLAVWADRNRVEIVSQQGGDPAAVS
FDAVTAGRARGCDVVIADTAGRLPTQLHLMDELKKIKRTIAKAQDGAPHEVLLVIDGNTGQNALAQVKAFDAALGLTGLI
VTKLDGTAKGGVLAAIARWCAEQGRVVPVYFIGVGERLEDLQTFDAREFANALLG

Nucleotide

• Length: 1128 bp

>NTDB_id=1099966 ACNFWM_RS20740 WP_132648645.1 4393710..4394837(+) (pilA) [Rubrivivax gelatinosus isolate YF10]
ATGTTCAGCTTTTTCAAGAAGAAGGTCACACCGGCCCCGGCCGCCCCCGTGGAGCCCACGCCGGCCGAGGCCTCCGACCA
GGCCCCGGTGCTGTCGGACGACGAGCTGGAGCGTGCCGCGCTCGCCGCTGCGCCGGAGCCCGAGGCCCTGCCCGAACCGG
CACCGTTGCCGCTCGACGCCGCTCCAGTGGCCGAGGTGCCGGCCGCTGCCGAGCCGCGTTCGCGCTGGCTCGACCGGCTC
AAGCTCGGCCTGCGCAAGACCGGCAGCAGCCTGACGCAGGTCTTCACCGGCACGAAGATCGACGACGCGCTGTACGAAGA
CCTGGAGTCGGCGCTGCTGGTGGCCGATGCCGGTGTCGGCGCGACGGAGTACCTGCTGCAGGACCTGAAACGTCGCGTGA
AGGAGGCCAAGGCCACCGAGCCCGCGGTGGTCAAGGCGCTGCTCGCCGACGCCGTGGCCGAGCTGCTGGCGCCGCTGCAG
AAGCCGCTCGCGATCGGCCAGGCGATGCCGACGGTGGTGATGGTCGCCGGCGTCAATGGCGCCGGCAAGACGACGACGAT
CGGCAAGCTGACGCGCCATCTGGCCGAGTCCGACCGGCGCGTGCTGCTGGCCGCGGCCGACACTTTCCGCGCCGCGGCGC
GCGAACAGCTCGCGGTCTGGGCCGACCGCAACCGCGTCGAGATCGTCAGCCAGCAGGGCGGGGATCCGGCGGCGGTGAGC
TTCGACGCCGTCACCGCCGGCCGCGCGCGCGGCTGCGACGTCGTCATCGCCGACACCGCCGGGCGCCTGCCGACGCAGCT
GCACCTGATGGACGAGCTGAAGAAGATCAAGCGCACGATCGCCAAGGCGCAGGACGGCGCGCCGCACGAGGTGCTGCTGG
TCATCGACGGCAACACCGGCCAGAACGCGCTGGCGCAGGTGAAGGCCTTCGACGCCGCGCTGGGCCTCACCGGCCTGATC
GTCACCAAGCTCGACGGCACCGCCAAGGGCGGCGTGCTGGCCGCGATCGCGCGCTGGTGCGCCGAGCAGGGCCGCGTCGT
GCCGGTCTACTTCATCGGCGTCGGCGAGCGGCTGGAAGACCTGCAGACCTTCGACGCCCGCGAGTTCGCGAACGCGCTGC
TGGGGTGA

Domains

Predicted by InterproScan.

• SRP54-type protein, helical bundle domain (SRP54_N) (88-150)

• SRP54-type protein, GTPase domain (SRP54) (170-375)

3D structure

• AlphaFold DB: A0A4R2MMT5

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilA	Neisseria gonorrhoeae MS11	47.031	100	0.528