Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   ACNFWN_RS07205 Genome accession   NZ_CP181387
Coordinates   1508921..1509313 (+) Length   130 a.a.
NCBI ID   WP_132646901.1    Uniprot ID   -
Organism   Rubrivivax gelatinosus isolate AJ1     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IS/Tn 1507698..1508651 1508921..1509313 flank 270


Gene organization within MGE regions


Location: 1507698..1509313
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACNFWN_RS07195 - 1507698..1508651 (+) 954 WP_132649838.1 IS1595 family transposase -
  ACNFWN_RS07200 - 1508715..1508867 (+) 153 WP_081487558.1 rubredoxin -
  ACNFWN_RS07205 pilG 1508921..1509313 (+) 393 WP_132646901.1 response regulator Regulator

Sequence

Protein


Download         Length: 130 a.a.        Molecular weight: 14478.72 Da        Isoelectric Point: 7.1365

>NTDB_id=1099941 ACNFWN_RS07205 WP_132646901.1 1508921..1509313(+) (pilG) [Rubrivivax gelatinosus isolate AJ1]
MNEAVSPGAKVLVIDDSNTIRRSAEIFLRQGGHEVVLAEDGFDALAKVNDHDPELIFCDILMPRLDGYQTCAIIKRNPRF
AKVPVIMLSSKDGLFDKARGRMVGSEDYLTKPFTKEQLLRAVEAFRRAAA

Nucleotide


Download         Length: 393 bp        

>NTDB_id=1099941 ACNFWN_RS07205 WP_132646901.1 1508921..1509313(+) (pilG) [Rubrivivax gelatinosus isolate AJ1]
GTGAACGAAGCCGTGTCCCCGGGCGCCAAGGTCCTGGTGATCGACGACAGCAACACGATCCGGCGCAGCGCCGAGATCTT
CCTGCGCCAGGGCGGCCACGAGGTCGTGCTGGCCGAGGACGGCTTCGACGCACTCGCCAAGGTCAATGATCACGACCCGG
AACTGATCTTCTGCGACATCCTGATGCCGCGGCTGGACGGTTACCAGACCTGCGCCATCATCAAGCGCAACCCGCGTTTC
GCGAAGGTGCCGGTCATCATGCTGTCGTCCAAGGATGGCCTGTTCGACAAGGCCCGGGGCCGCATGGTCGGCTCCGAGGA
CTACCTGACCAAGCCGTTCACCAAGGAACAACTCCTGCGCGCGGTGGAGGCCTTCCGCCGCGCCGCCGCCTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(11-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

61.947

86.923

0.538

Multiple sequence alignment