Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   ABXS94_RS01185 Genome accession   NZ_AP031566
Coordinates   273949..274269 (+) Length   106 a.a.
NCBI ID   WP_353675407.1    Uniprot ID   -
Organism   Acinetobacter towneri strain PT23-B2     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 268949..279269
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABXS94_RS01160 (PT23B2_02230) hemC 269486..270406 (+) 921 WP_096901970.1 hydroxymethylbilane synthase -
  ABXS94_RS01165 (PT23B2_02240) - 270428..271207 (+) 780 WP_353675406.1 uroporphyrinogen-III synthase -
  ABXS94_RS01170 (PT23B2_02250) - 271204..272040 (+) 837 WP_208011984.1 hypothetical protein -
  ABXS94_RS01175 (PT23B2_02260) - 272041..273234 (+) 1194 WP_180037701.1 heme biosynthesis protein HemY -
  ABXS94_RS01180 (PT23B2_02270) - 273244..273675 (+) 432 WP_004975749.1 thioesterase family protein -
  ABXS94_RS01185 (PT23B2_02280) hns 273949..274269 (+) 321 WP_353675407.1 H-NS histone family protein Regulator
  ABXS94_RS01190 (PT23B2_02290) gspN 274432..275172 (+) 741 WP_096901906.1 type II secretion system protein N -
  ABXS94_RS01195 (PT23B2_02300) - 275172..276011 (+) 840 WP_004975757.1 type II secretion system protein N -
  ABXS94_RS01200 (PT23B2_02310) gspD 276072..278327 (+) 2256 WP_353675408.1 type II secretion system secretin GspD -
  ABXS94_RS01205 (PT23B2_02320) - 278397..279047 (+) 651 WP_004975761.1 FHA domain-containing protein -

Sequence

Protein


Download         Length: 106 a.a.        Molecular weight: 12002.80 Da        Isoelectric Point: 10.0958

>NTDB_id=109988 ABXS94_RS01185 WP_353675407.1 273949..274269(+) (hns) [Acinetobacter towneri strain PT23-B2]
MQQSHLSVEQLKRLQAEAEALIATKKDQAIEDAYNQILAIADNLGLSIEQILEVGESKRKKSPRKTVAPRYRSKINSTDT
WTGRGKKPRWLVAELEKGAKLEDFLI

Nucleotide


Download         Length: 321 bp        

>NTDB_id=109988 ABXS94_RS01185 WP_353675407.1 273949..274269(+) (hns) [Acinetobacter towneri strain PT23-B2]
GTGCAACAAAGCCATTTGTCTGTAGAACAGTTAAAGCGTTTACAAGCTGAAGCGGAAGCATTAATTGCCACGAAAAAAGA
TCAAGCAATTGAAGATGCCTATAATCAAATTTTAGCGATTGCAGACAATTTGGGTTTAAGCATTGAGCAGATTTTGGAAG
TTGGCGAAAGCAAGCGTAAGAAAAGCCCACGTAAAACTGTAGCGCCACGTTATCGTAGCAAAATCAATTCTACAGATACT
TGGACTGGTCGTGGTAAAAAACCACGCTGGTTAGTCGCTGAATTAGAAAAAGGCGCAAAACTTGAAGATTTTCTAATCTA
A

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(10-100)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

75.728

97.17

0.736

Multiple sequence alignment