Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | ACNANZ_RS17800 | Genome accession | NZ_CP181370 |
| Coordinates | 3746341..3747465 (+) | Length | 374 a.a. |
| NCBI ID | WP_416400512.1 | Uniprot ID | - |
| Organism | Alicycliphilus denitrificans strain A12 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 3741341..3752465
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACNANZ_RS17770 (ACNANZ_17770) | - | 3741399..3741791 (+) | 393 | WP_094438109.1 | hypothetical protein | - |
| ACNANZ_RS17775 (ACNANZ_17775) | - | 3741881..3742195 (+) | 315 | WP_094438110.1 | BON domain-containing protein | - |
| ACNANZ_RS17780 (ACNANZ_17780) | coaD | 3742306..3742794 (-) | 489 | WP_094438111.1 | pantetheine-phosphate adenylyltransferase | - |
| ACNANZ_RS17785 (ACNANZ_17785) | rsmD | 3742922..3743512 (-) | 591 | WP_416400509.1 | 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD | - |
| ACNANZ_RS17790 (ACNANZ_17790) | - | 3743509..3744867 (-) | 1359 | WP_416400510.1 | M16 family metallopeptidase | - |
| ACNANZ_RS17795 (ACNANZ_17795) | - | 3744881..3746311 (-) | 1431 | WP_416400511.1 | M16 family metallopeptidase | - |
| ACNANZ_RS17800 (ACNANZ_17800) | pilA | 3746341..3747465 (+) | 1125 | WP_416400512.1 | signal recognition particle-docking protein FtsY | Machinery gene |
| ACNANZ_RS17805 (ACNANZ_17805) | - | 3747481..3748434 (-) | 954 | WP_201396114.1 | LysR family transcriptional regulator | - |
| ACNANZ_RS17810 (ACNANZ_17810) | - | 3748550..3749488 (+) | 939 | WP_416400513.1 | dihydrodipicolinate synthase family protein | - |
| ACNANZ_RS17815 (ACNANZ_17815) | - | 3749526..3750491 (+) | 966 | WP_201398525.1 | Bug family tripartite tricarboxylate transporter substrate binding protein | - |
| ACNANZ_RS17820 (ACNANZ_17820) | - | 3750481..3751185 (+) | 705 | WP_416400514.1 | SDR family NAD(P)-dependent oxidoreductase | - |
| ACNANZ_RS17825 (ACNANZ_17825) | - | 3751212..3752378 (+) | 1167 | WP_416400515.1 | mandelate racemase/muconate lactonizing enzyme family protein | - |
Sequence
Protein
Download Length: 374 a.a. Molecular weight: 39108.65 Da Isoelectric Point: 5.9996
>NTDB_id=1099879 ACNANZ_RS17800 WP_416400512.1 3746341..3747465(+) (pilA) [Alicycliphilus denitrificans strain A12]
MFSFFKKKSPSPAEPSSAPAPDAASALPADAPTGGSALGWLRKSFGAQDAAAPQAAPAADEAPPAVPEPAPKPEGARQGW
MDRLKSGLRKTGGSIATVFTGTQINDALYEELEDALLMADTGVKATQHLLADLRRRVKEAKATEPAAVKALLADALADLL
RPLEKPLVIGEHQPTVIMVAGVNGAGKTTSIGKLTRHLADHGESVLLAAADTFRAAAREQLGVWATRNTVEIISQEGGDP
AAVSFDAVTAGRARGKDVVLVDTAGRLPTQLHLMEELRKIKRVVTKADATAPHEVLLVIDGNTGQNALAQVRAFDDALQL
TGLIVTKLDGTAKGGVLAAIAQERPVPVYFIGVGEKVEDLETFNAREFAQALLA
MFSFFKKKSPSPAEPSSAPAPDAASALPADAPTGGSALGWLRKSFGAQDAAAPQAAPAADEAPPAVPEPAPKPEGARQGW
MDRLKSGLRKTGGSIATVFTGTQINDALYEELEDALLMADTGVKATQHLLADLRRRVKEAKATEPAAVKALLADALADLL
RPLEKPLVIGEHQPTVIMVAGVNGAGKTTSIGKLTRHLADHGESVLLAAADTFRAAAREQLGVWATRNTVEIISQEGGDP
AAVSFDAVTAGRARGKDVVLVDTAGRLPTQLHLMEELRKIKRVVTKADATAPHEVLLVIDGNTGQNALAQVRAFDDALQL
TGLIVTKLDGTAKGGVLAAIAQERPVPVYFIGVGEKVEDLETFNAREFAQALLA
Nucleotide
Download Length: 1125 bp
>NTDB_id=1099879 ACNANZ_RS17800 WP_416400512.1 3746341..3747465(+) (pilA) [Alicycliphilus denitrificans strain A12]
ATGTTCAGTTTTTTCAAGAAGAAATCCCCCTCCCCCGCCGAGCCGTCCAGCGCGCCGGCGCCGGACGCCGCCAGCGCCCT
CCCGGCCGACGCGCCCACGGGCGGCAGCGCGCTCGGCTGGCTGCGCAAGTCCTTCGGCGCGCAGGACGCCGCTGCGCCGC
AGGCCGCGCCCGCGGCGGACGAGGCCCCGCCCGCCGTGCCCGAGCCCGCCCCCAAGCCCGAGGGCGCGCGCCAGGGCTGG
ATGGACCGCCTCAAGTCCGGCCTGCGCAAGACCGGCGGCAGCATCGCCACCGTCTTCACGGGCACGCAGATCAACGACGC
GCTGTACGAGGAGCTCGAAGACGCCCTGCTCATGGCCGACACCGGCGTGAAGGCCACGCAGCACCTGCTGGCCGACCTCA
GGCGCCGCGTGAAGGAGGCCAAGGCCACCGAGCCCGCCGCCGTCAAGGCCCTGCTGGCCGACGCGCTGGCCGACCTGCTG
CGCCCGCTGGAAAAGCCCCTGGTCATCGGCGAGCACCAGCCCACCGTGATCATGGTGGCCGGCGTGAACGGCGCGGGCAA
GACCACGTCGATCGGCAAGCTCACCAGGCACCTGGCCGACCACGGCGAGAGCGTGCTGCTGGCCGCGGCCGACACCTTCC
GCGCCGCGGCGCGCGAGCAGCTCGGCGTCTGGGCCACGCGCAACACGGTGGAGATCATCAGCCAGGAAGGGGGCGACCCC
GCCGCCGTGAGCTTCGACGCCGTCACCGCCGGCCGCGCGCGCGGCAAGGACGTGGTGCTGGTGGACACGGCCGGGCGCCT
GCCCACGCAGCTGCACCTGATGGAGGAGCTCAGGAAGATCAAGCGCGTCGTGACCAAGGCCGACGCGACAGCCCCGCACG
AGGTGCTGCTGGTGATCGACGGCAACACCGGCCAGAACGCCCTGGCCCAGGTGCGCGCGTTCGACGACGCGCTGCAGCTC
ACCGGCCTCATCGTCACCAAGCTCGACGGCACGGCCAAGGGCGGCGTGCTGGCCGCCATCGCGCAGGAGCGGCCCGTGCC
CGTCTACTTCATCGGCGTGGGCGAGAAGGTGGAAGACCTGGAGACCTTCAACGCGCGCGAGTTCGCGCAGGCGCTGCTGG
CCTGA
ATGTTCAGTTTTTTCAAGAAGAAATCCCCCTCCCCCGCCGAGCCGTCCAGCGCGCCGGCGCCGGACGCCGCCAGCGCCCT
CCCGGCCGACGCGCCCACGGGCGGCAGCGCGCTCGGCTGGCTGCGCAAGTCCTTCGGCGCGCAGGACGCCGCTGCGCCGC
AGGCCGCGCCCGCGGCGGACGAGGCCCCGCCCGCCGTGCCCGAGCCCGCCCCCAAGCCCGAGGGCGCGCGCCAGGGCTGG
ATGGACCGCCTCAAGTCCGGCCTGCGCAAGACCGGCGGCAGCATCGCCACCGTCTTCACGGGCACGCAGATCAACGACGC
GCTGTACGAGGAGCTCGAAGACGCCCTGCTCATGGCCGACACCGGCGTGAAGGCCACGCAGCACCTGCTGGCCGACCTCA
GGCGCCGCGTGAAGGAGGCCAAGGCCACCGAGCCCGCCGCCGTCAAGGCCCTGCTGGCCGACGCGCTGGCCGACCTGCTG
CGCCCGCTGGAAAAGCCCCTGGTCATCGGCGAGCACCAGCCCACCGTGATCATGGTGGCCGGCGTGAACGGCGCGGGCAA
GACCACGTCGATCGGCAAGCTCACCAGGCACCTGGCCGACCACGGCGAGAGCGTGCTGCTGGCCGCGGCCGACACCTTCC
GCGCCGCGGCGCGCGAGCAGCTCGGCGTCTGGGCCACGCGCAACACGGTGGAGATCATCAGCCAGGAAGGGGGCGACCCC
GCCGCCGTGAGCTTCGACGCCGTCACCGCCGGCCGCGCGCGCGGCAAGGACGTGGTGCTGGTGGACACGGCCGGGCGCCT
GCCCACGCAGCTGCACCTGATGGAGGAGCTCAGGAAGATCAAGCGCGTCGTGACCAAGGCCGACGCGACAGCCCCGCACG
AGGTGCTGCTGGTGATCGACGGCAACACCGGCCAGAACGCCCTGGCCCAGGTGCGCGCGTTCGACGACGCGCTGCAGCTC
ACCGGCCTCATCGTCACCAAGCTCGACGGCACGGCCAAGGGCGGCGTGCTGGCCGCCATCGCGCAGGAGCGGCCCGTGCC
CGTCTACTTCATCGGCGTGGGCGAGAAGGTGGAAGACCTGGAGACCTTCAACGCGCGCGAGTTCGCGCAGGCGCTGCTGG
CCTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Neisseria gonorrhoeae MS11 |
57.273 |
88.235 |
0.505 |