Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   H9T68_RS24645 Genome accession   NZ_CP181346
Coordinates   5440220..5441791 (-) Length   523 a.a.
NCBI ID   WP_280191817.1    Uniprot ID   -
Organism   Delftia sp. PS-11     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5435220..5446791
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H9T68_RS24625 (H9T68_024620) - 5435840..5436670 (-) 831 WP_280191814.1 hypothetical protein -
  H9T68_RS24630 (H9T68_024625) - 5436751..5437890 (-) 1140 WP_280191815.1 slipin family protein -
  H9T68_RS24640 (H9T68_024635) rtcR 5438591..5440210 (+) 1620 WP_280191816.1 RNA repair transcriptional activator RtcR -
  H9T68_RS24645 (H9T68_024640) rpoN/rpoN1 5440220..5441791 (-) 1572 WP_280191817.1 RNA polymerase factor sigma-54 Machinery gene
  H9T68_RS24650 (H9T68_024645) lptB 5441836..5442642 (-) 807 WP_280191818.1 LPS export ABC transporter ATP-binding protein -
  H9T68_RS24655 (H9T68_024650) lptA 5442639..5443295 (-) 657 WP_280191819.1 lipopolysaccharide transport periplasmic protein LptA -
  H9T68_RS24660 (H9T68_024655) - 5443571..5443861 (+) 291 WP_280191831.1 nucleotidyltransferase family protein -
  H9T68_RS24665 (H9T68_024660) - 5443858..5443986 (+) 129 WP_280191820.1 hypothetical protein -
  H9T68_RS24670 (H9T68_024665) - 5444077..5444724 (-) 648 WP_280191821.1 thiol:disulfide interchange protein DsbA/DsbL -
  H9T68_RS24675 (H9T68_024670) - 5444790..5445479 (-) 690 WP_280191822.1 SPOR domain-containing protein -

Sequence

Protein


Download         Length: 523 a.a.        Molecular weight: 57467.55 Da        Isoelectric Point: 4.5349

>NTDB_id=1099822 H9T68_RS24645 WP_280191817.1 5440220..5441791(-) (rpoN/rpoN1) [Delftia sp. PS-11]
MKPGLSLRVSQHLSLTPQLQQSIQLLQLSTLELAQEVEQMLGDNPFLEVAGDDDHGPESSNVPTNDAAPQAGDDLSLTSP
QWEAAAETAADAAETSGTAESLSWEGDGQSGGDDGEWGGDAGSSRTRGQGDDDELDATELARSGESLTEYLHRQAMTLRL
GEVDRAALRFLIENLNDDGYLEDSLEELARGLGGDDIEECEELVHRFTVALRLLQSLEPVGVGARDLAECLQLQLRDQLE
DAEREGEDDEALAVLRTALDICAQPMDLLARRDLRKLAVLCGARDELLREALALIARLEPRPGRRFADVQRQIVVPDVIV
RPVRSGAGRLDFSVQLNPDVMPKLRVHDIYASALRGHRGSEGHAALQQRLQEARWFIKNIQQRFDTILRVSQAIVERQKN
FFVHGELAMRPLVLRDIADALGLHESTISRVTTAKYMATPQGTYELKYFFGSGLGTETGGNASSTAVRALIKQFVGAEDP
KKPLSDNQLADMLKEQGIECARRTVAKYRELLKIPPTTLRKAL

Nucleotide


Download         Length: 1572 bp        

>NTDB_id=1099822 H9T68_RS24645 WP_280191817.1 5440220..5441791(-) (rpoN/rpoN1) [Delftia sp. PS-11]
TTGAAGCCCGGACTTTCGCTACGCGTCTCCCAGCATCTTTCCCTGACGCCCCAGCTGCAGCAGTCGATACAGCTGCTGCA
GCTGTCCACGCTGGAGCTGGCCCAGGAAGTCGAGCAGATGCTGGGCGACAACCCTTTTCTGGAGGTCGCTGGCGATGATG
ACCATGGTCCTGAAAGCAGCAACGTCCCAACGAACGATGCCGCGCCGCAGGCCGGTGACGATCTGTCCCTGACGTCCCCG
CAGTGGGAGGCCGCAGCCGAGACTGCGGCCGATGCGGCCGAGACCTCCGGCACGGCAGAGTCCCTGAGCTGGGAGGGCGA
TGGCCAGTCCGGCGGCGACGATGGCGAATGGGGGGGCGATGCGGGCTCCAGCCGCACGCGCGGCCAGGGCGATGATGACG
AGCTTGACGCCACGGAGCTGGCCCGCAGCGGCGAAAGCCTGACCGAATACCTGCACCGCCAGGCCATGACCCTGCGCCTG
GGCGAGGTGGACCGCGCCGCGCTGCGCTTCCTGATCGAGAACCTCAACGACGATGGCTATCTGGAGGATTCTCTTGAAGA
GCTGGCGCGTGGGCTGGGGGGCGACGATATCGAGGAATGCGAGGAGCTGGTGCACCGCTTCACCGTGGCGTTGCGCCTGC
TGCAAAGCCTGGAGCCCGTGGGCGTGGGCGCGCGCGACCTGGCTGAATGCCTGCAGCTGCAGCTGCGCGACCAGCTGGAA
GATGCCGAACGCGAGGGCGAGGATGACGAGGCGCTGGCCGTGCTGCGCACGGCGCTGGACATCTGCGCCCAGCCGATGGA
TCTGCTGGCACGGCGCGATCTGCGCAAGCTCGCCGTCCTGTGCGGCGCGCGCGACGAGTTGCTGCGCGAGGCGCTGGCTC
TGATCGCGCGCCTGGAGCCGCGCCCTGGCCGGCGTTTTGCCGATGTGCAGCGCCAGATCGTCGTGCCCGATGTCATCGTA
CGCCCGGTGCGCAGCGGCGCGGGCCGGCTGGATTTCAGCGTGCAGCTCAATCCCGATGTCATGCCCAAGCTGCGTGTGCA
CGACATCTATGCCAGCGCGCTGCGCGGCCACCGTGGCAGCGAAGGCCACGCGGCGCTGCAGCAGCGGCTGCAGGAGGCGC
GCTGGTTCATCAAGAACATCCAGCAGCGCTTCGACACCATCTTGCGCGTGTCGCAGGCCATCGTCGAGCGCCAGAAGAAC
TTCTTTGTGCACGGCGAGCTGGCCATGCGGCCGCTGGTGCTGCGCGATATCGCCGATGCGCTGGGCCTGCATGAATCGAC
CATCAGCCGCGTGACCACGGCCAAGTACATGGCCACGCCGCAAGGCACCTACGAGCTCAAGTACTTTTTCGGCTCGGGCC
TGGGCACCGAGACAGGCGGCAATGCGTCGAGCACAGCCGTGCGCGCGCTGATCAAGCAATTCGTCGGCGCCGAAGATCCC
AAAAAGCCGCTGTCGGACAACCAGCTGGCCGACATGCTCAAGGAGCAGGGCATCGAATGCGCGCGGCGCACCGTGGCCAA
GTACCGCGAGCTGCTCAAGATCCCGCCGACCACGTTGCGCAAGGCGCTGTAG

Domains

Predicted by InterproScan.

Sigma-54, DNA binding domain (Sigma54_DBD)

(365-521)

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(5-49)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(138-350)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

51.619

100

0.518

Multiple sequence alignment