Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapF   Type   Regulator
Locus tag   ACLQ7P_RS20895 Genome accession   NZ_CP181322
Coordinates   3915194..3916339 (+) Length   381 a.a.
NCBI ID   WP_080529921.1    Uniprot ID   -
Organism   Bacillus subtilis subsp. subtilis strain JCK-1398     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 3910194..3921339
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLQ7P_RS20870 (ACLQ7P_20870) albF 3910210..3911490 (+) 1281 WP_017696258.1 M16 family metallopeptidase -
  ACLQ7P_RS20875 (ACLQ7P_20875) albG 3911487..3912188 (+) 702 WP_416247211.1 antilisterial bacteriocin subtilosin biosynthesis protein AlbG -
  ACLQ7P_RS20880 (ACLQ7P_20880) ywhL 3912194..3913570 (-) 1377 WP_416247212.1 YncE family protein -
  ACLQ7P_RS20885 (ACLQ7P_20885) ywhK 3913609..3914964 (-) 1356 WP_416247213.1 YncE family protein -
  ACLQ7P_RS20890 (ACLQ7P_20890) - 3914961..3915191 (-) 231 Protein_4060 hypothetical protein -
  ACLQ7P_RS20895 (ACLQ7P_20895) rapF 3915194..3916339 (+) 1146 WP_080529921.1 tetratricopeptide repeat protein Regulator
  ACLQ7P_RS20900 (ACLQ7P_20900) - 3916323..3916442 (+) 120 WP_014665774.1 PhrC/PhrF family phosphatase-inhibitory pheromone -
  ACLQ7P_RS20905 (ACLQ7P_20905) ywhH 3916542..3917013 (+) 472 Protein_4063 YbaK/EbsC family protein -
  ACLQ7P_RS20910 (ACLQ7P_20910) speB 3917044..3917916 (-) 873 WP_121591255.1 agmatinase -
  ACLQ7P_RS20915 (ACLQ7P_20915) speE 3917977..3918807 (-) 831 WP_003227543.1 spermidine synthase -
  ACLQ7P_RS20920 (ACLQ7P_20920) pbpG 3919010..3921085 (+) 2076 WP_121591256.1 transglycosylase domain-containing protein -

Sequence

Protein


Download         Length: 381 a.a.        Molecular weight: 45565.18 Da        Isoelectric Point: 4.9877

>NTDB_id=1099738 ACLQ7P_RS20895 WP_080529921.1 3915194..3916339(+) (rapF) [Bacillus subtilis subsp. subtilis strain JCK-1398]
MTGVISSSSIGEKINEWYMYIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPR
LSDLLLEIDKKQARLTGLLEYYFNFFRGMYELDQREYVLAIQFFKKAESKLVFVKDKIDKAEFFFKMSEVYYYMKQTYVS
MDYARQAFEIYSEQTTYDIRMIQCQSLFGANFLDLKQYEKAIAHFQKAFTLAKTEQQPQLMGRTLYNIALCKQNQNSFES
AIEYVKKSIQVFEGSKMLPSLPQAFFLITQIYFKLGKIDNACEYHKKGKEYSAAAGDTVYLTEFEFLESLYLSGPDEERI
EKCFVFLESKMMYADIEDFALDVAKYYHQQENYKKASHYFLKVEEARQHIQGGVNLYEMEV

Nucleotide


Download         Length: 1146 bp        

>NTDB_id=1099738 ACLQ7P_RS20895 WP_080529921.1 3915194..3916339(+) (rapF) [Bacillus subtilis subsp. subtilis strain JCK-1398]
GTGACAGGTGTCATATCTTCTTCTTCCATCGGAGAAAAGATTAACGAATGGTATATGTACATACGCCGATTCAGCATACC
CGATGCAGAATATTTGCGACGAGAAATCAAGCAAGAGCTGGATCAAATGGAAGAAGACCAAGACCTTCATTTGTACTATT
CACTGATGGAGTTTCGGCACAACCTGATGCTTGAGTACCTTGAACCGTTAGAAAAAATGAGGATTGAGGAACAGCCGAGA
CTGTCTGATCTCCTGCTTGAGATTGATAAAAAACAGGCTCGTTTAACAGGTCTGCTTGAGTACTATTTTAATTTCTTCAG
AGGCATGTATGAGCTGGATCAGCGGGAATATGTATTAGCCATTCAATTCTTTAAAAAAGCTGAGAGCAAGCTGGTTTTTG
TGAAAGATAAAATCGATAAAGCTGAATTCTTTTTCAAAATGTCAGAAGTCTATTATTATATGAAACAAACTTATGTCTCC
ATGGACTATGCACGTCAAGCATTCGAAATATACAGTGAACAGACTACATATGATATCAGAATGATTCAATGCCAGTCCTT
ATTCGGAGCCAACTTTTTGGATTTAAAACAATACGAAAAAGCAATTGCCCATTTTCAAAAAGCCTTTACACTTGCAAAAA
CAGAGCAGCAGCCCCAATTAATGGGAAGAACACTTTATAACATAGCACTCTGCAAGCAAAACCAAAACAGTTTTGAATCA
GCGATAGAGTATGTAAAAAAATCTATTCAAGTATTTGAAGGATCTAAAATGCTTCCTTCATTGCCACAAGCTTTTTTCCT
AATTACACAAATTTATTTTAAATTAGGTAAGATTGATAACGCCTGTGAATATCATAAAAAAGGAAAAGAGTATTCTGCAG
CTGCGGGAGATACCGTGTATCTAACGGAGTTTGAATTTTTGGAATCTTTATACTTGTCTGGACCGGATGAGGAACGGATA
GAAAAATGTTTTGTTTTTCTTGAAAGTAAAATGATGTATGCAGATATTGAGGACTTCGCACTTGATGTTGCTAAATATTA
TCATCAACAGGAAAATTACAAAAAAGCATCTCATTACTTTTTAAAGGTTGAAGAAGCAAGACAGCACATTCAAGGGGGGG
TGAATTTATATGAAATGGAAGTATAA

Domains

Predicted by InterproScan.

Tetratricopeptide repeat (TPR_8)

(263-290)

response regulator aspartate phosphatase H, N terminal (RapH_N)

(4-65)

Tetratricopeptide repeat (TPR_12)

(189-253)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapF Bacillus subtilis subsp. subtilis str. 168

80.315

100

0.803
  rapC Bacillus subtilis subsp. subtilis str. 168

57.105

99.738

0.57

Multiple sequence alignment