Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   ACLQ7P_RS14415 Genome accession   NZ_CP181322
Coordinates   2678888..2679166 (-) Length   92 a.a.
NCBI ID   WP_121591763.1    Uniprot ID   -
Organism   Bacillus subtilis subsp. subtilis strain JCK-1398     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 2673888..2684166
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLQ7P_RS14395 (ACLQ7P_14395) ade 2673952..2675685 (-) 1734 WP_326122049.1 adenine deaminase -
  ACLQ7P_RS14400 (ACLQ7P_14400) ktrC 2675841..2676506 (-) 666 WP_121591766.1 Ktr system potassium transporter KtrC -
  ACLQ7P_RS14405 (ACLQ7P_14405) ykqA 2676569..2677396 (-) 828 WP_121591765.1 gamma-glutamylcyclotransferase -
  ACLQ7P_RS14410 (ACLQ7P_14410) kinC 2677412..2678698 (-) 1287 WP_121591764.1 two-component sensor histidine kinase KinC -
  ACLQ7P_RS14415 (ACLQ7P_14415) abrB 2678888..2679166 (-) 279 WP_121591763.1 transcriptional regulator AbhA Regulator
  ACLQ7P_RS14420 (ACLQ7P_14420) mreBH 2679450..2680457 (+) 1008 WP_026113694.1 cell shape-determining protein MreBH -
  ACLQ7P_RS14425 (ACLQ7P_14425) ykpC 2680558..2680692 (+) 135 WP_003238865.1 protein YkpC -
  ACLQ7P_RS14430 (ACLQ7P_14430) ampS 2680804..2682036 (+) 1233 WP_003232341.1 aminopeptidase -
  ACLQ7P_RS14435 (ACLQ7P_14435) - 2682166..2683518 (+) 1353 WP_014478984.1 IS1182 family transposase -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 10284.12 Da        Isoelectric Point: 5.8808

>NTDB_id=1099713 ACLQ7P_RS14415 WP_121591763.1 2678888..2679166(-) (abrB) [Bacillus subtilis subsp. subtilis strain JCK-1398]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIILKKYKPHGVCLMTGEITSENKEYGNGKITLSPEGAQ
LLLEEIQAVLKE

Nucleotide


Download         Length: 279 bp        

>NTDB_id=1099713 ACLQ7P_RS14415 WP_121591763.1 2678888..2679166(-) (abrB) [Bacillus subtilis subsp. subtilis strain JCK-1398]
ATGAAATCAATAGGTGTTGTGAGAAAAGTAGATGAATTAGGCCGCATTGTCATGCCGATTGAGTTGAGACGGGCATTGGA
TATTGCCATAAAAGACAGCATTGAGTTTTTTGTTGACGGAGATAAAATTATCTTGAAAAAGTACAAACCTCATGGCGTTT
GTTTAATGACTGGAGAAATCACTTCAGAAAATAAAGAATACGGCAACGGTAAAATTACGCTAAGCCCTGAGGGTGCACAG
CTGCTTCTGGAAGAAATTCAAGCCGTTTTAAAAGAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

58.242

98.913

0.576

Multiple sequence alignment