Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   ACLQ7P_RS10195 Genome accession   NZ_CP181322
Coordinates   1950101..1950721 (-) Length   206 a.a.
NCBI ID   WP_004399067.1    Uniprot ID   -
Organism   Bacillus subtilis subsp. subtilis strain JCK-1398     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1945101..1955721
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLQ7P_RS10175 (ACLQ7P_10175) dnaD 1945392..1946090 (+) 699 WP_004398499.1 DNA replication protein DnaD -
  ACLQ7P_RS10180 (ACLQ7P_10180) nth 1946109..1946768 (+) 660 WP_009967580.1 endonuclease III -
  ACLQ7P_RS10185 (ACLQ7P_10185) ypoC 1946765..1947259 (+) 495 WP_041351582.1 YpoC family protein -
  ACLQ7P_RS10190 (ACLQ7P_10190) ponA 1947335..1950079 (-) 2745 WP_416247575.1 PBP1A family penicillin-binding protein -
  ACLQ7P_RS10195 (ACLQ7P_10195) recU 1950101..1950721 (-) 621 WP_004399067.1 Holliday junction resolvase RecU Machinery gene
  ACLQ7P_RS10200 (ACLQ7P_10200) yppC 1950762..1951688 (+) 927 WP_416247576.1 DUF2515 domain-containing protein -
  ACLQ7P_RS10205 (ACLQ7P_10205) sspM 1951721..1951825 (-) 105 WP_003225606.1 acid-soluble spore protein SspM -
  ACLQ7P_RS10210 (ACLQ7P_10210) yppD 1952024..1952269 (+) 246 WP_015251831.1 YppD family protein -
  ACLQ7P_RS10215 (ACLQ7P_10215) yppE 1952315..1952686 (+) 372 WP_416247577.1 YppE family protein -
  ACLQ7P_RS10220 (ACLQ7P_10220) - 1952800..1954152 (+) 1353 WP_416247578.1 IS1182 family transposase -
  ACLQ7P_RS10225 (ACLQ7P_10225) yppF 1954311..1954499 (-) 189 WP_003230690.1 YppF family protein -
  ACLQ7P_RS10230 (ACLQ7P_10230) sppG 1954686..1955063 (+) 378 WP_041053169.1 YppG family protein -
  ACLQ7P_RS10235 (ACLQ7P_10235) ypqA 1955084..1955503 (-) 420 WP_014480103.1 Hsp20/alpha crystallin family protein -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 23959.09 Da        Isoelectric Point: 9.6240

>NTDB_id=1099708 ACLQ7P_RS10195 WP_004399067.1 1950101..1950721(-) (recU) [Bacillus subtilis subsp. subtilis strain JCK-1398]
MIRYPNGKTFQPKHSVSSQNSQKRAPSYSNRGMTLEDDLNETNKYYLTNQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTSFPLQNFHDHQIEHMKQVKAQDGICFVIISAFDQVYFLEADKLFYFWDRKE
KNGRKSIRKDELEETAYPISLGYAPRIDYISIIEQLYFSPSSGAKG

Nucleotide


Download         Length: 621 bp        

>NTDB_id=1099708 ACLQ7P_RS10195 WP_004399067.1 1950101..1950721(-) (recU) [Bacillus subtilis subsp. subtilis strain JCK-1398]
GTGATTCGGTATCCTAACGGAAAAACATTTCAGCCGAAACATTCGGTTTCATCCCAAAACAGTCAGAAAAGGGCCCCGTC
TTACAGTAATCGCGGAATGACCCTCGAAGATGACTTAAACGAAACGAATAAGTATTATCTGACAAACCAAATTGCCGTTA
TACACAAAAAGCCGACACCTGTTCAAATTGTAAATGTCCATTATCCAAAAAGAAGTGCCGCAGTGATTAAAGAAGCTTAC
TTTAAACAATCATCGACAACAGACTACAATGGGATTTACAAAGGACGGTATATTGATTTTGAGGCGAAAGAAACGAAAAA
CAAGACCTCTTTCCCCCTGCAGAATTTTCATGACCATCAAATCGAGCATATGAAGCAGGTAAAAGCTCAAGACGGTATTT
GTTTTGTTATTATATCCGCTTTCGACCAGGTTTATTTTTTGGAAGCCGATAAGCTGTTTTATTTCTGGGACAGAAAAGAA
AAAAACGGCAGAAAATCAATTCGAAAAGATGAGTTGGAAGAAACAGCTTATCCGATTTCTCTTGGATACGCACCCAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCCATCATCTGGTGCGAAAGGTTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment