Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinI   Type   Regulator
Locus tag   ACLQ7P_RS08285 Genome accession   NZ_CP181322
Coordinates   1621490..1621663 (-) Length   57 a.a.
NCBI ID   WP_003230187.1    Uniprot ID   A0A063X7W9
Organism   Bacillus subtilis subsp. subtilis strain JCK-1398     
Function   inhibit the expression of sinR (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IS/Tn 1619702..1620940 1621490..1621663 flank 550


Gene organization within MGE regions


Location: 1619702..1621663
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLQ7P_RS08275 (ACLQ7P_08275) - 1619702..1620949 (-) 1248 WP_031600262.1 IS256-like element ISBsu2 family transposase -
  ACLQ7P_RS08280 (ACLQ7P_08280) sinR 1621121..1621456 (-) 336 WP_003226345.1 transcriptional regulator SinR Regulator
  ACLQ7P_RS08285 (ACLQ7P_08285) sinI 1621490..1621663 (-) 174 WP_003230187.1 anti-repressor SinI Regulator

Sequence

Protein


Download         Length: 57 a.a.        Molecular weight: 6601.52 Da        Isoelectric Point: 6.7231

>NTDB_id=1099705 ACLQ7P_RS08285 WP_003230187.1 1621490..1621663(-) (sinI) [Bacillus subtilis subsp. subtilis strain JCK-1398]
MKNAKQEHFELDQEWVELMVEAKEANISPEEIRKYLLLNKKSAHPGPAARSHTVNPF

Nucleotide


Download         Length: 174 bp        

>NTDB_id=1099705 ACLQ7P_RS08285 WP_003230187.1 1621490..1621663(-) (sinI) [Bacillus subtilis subsp. subtilis strain JCK-1398]
ATGAAGAATGCAAAACAAGAGCACTTTGAATTGGATCAAGAATGGGTTGAATTAATGGTGGAAGCCAAAGAGGCAAATAT
CAGCCCGGAAGAAATACGAAAATATTTACTTTTAAACAAAAAGTCTGCTCATCCTGGTCCGGCAGCCAGAAGTCATACCG
TAAATCCTTTCTGA

Domains

Predicted by InterproScan.

Anti-repressor SinI (SinI)

(11-36)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A063X7W9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinI Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment