Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGF   Type   Machinery gene
Locus tag   ACLQ7P_RS08240 Genome accession   NZ_CP181322
Coordinates   1615846..1616226 (+) Length   126 a.a.
NCBI ID   WP_121590957.1    Uniprot ID   -
Organism   Bacillus subtilis subsp. subtilis strain JCK-1398     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1610846..1621226
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLQ7P_RS08210 (ACLQ7P_08210) corA 1611303..1612255 (+) 953 Protein_1556 magnesium transporter CorA -
  ACLQ7P_RS08215 (ACLQ7P_08215) comGA 1612664..1613734 (+) 1071 WP_015714258.1 competence protein ComGA Machinery gene
  ACLQ7P_RS08220 (ACLQ7P_08220) comGB 1613721..1614758 (+) 1038 WP_121590958.1 competence type IV pilus assembly protein ComGB Machinery gene
  ACLQ7P_RS08225 (ACLQ7P_08225) comGC 1614772..1615068 (+) 297 WP_003230162.1 comG operon protein ComGC Machinery gene
  ACLQ7P_RS08230 (ACLQ7P_08230) comGD 1615058..1615489 (+) 432 WP_017696194.1 competence type IV pilus minor pilin ComGD Machinery gene
  ACLQ7P_RS08235 (ACLQ7P_08235) comGE 1615473..1615820 (+) 348 WP_017696195.1 competence type IV pilus minor pilin ComGE Machinery gene
  ACLQ7P_RS08240 (ACLQ7P_08240) comGF 1615846..1616226 (+) 381 WP_121590957.1 ComGF family competence protein Machinery gene
  ACLQ7P_RS08245 (ACLQ7P_08245) comGG 1616227..1616601 (+) 375 WP_032726157.1 ComG operon protein ComGG Machinery gene
  ACLQ7P_RS08250 (ACLQ7P_08250) spoIITA 1616672..1616851 (+) 180 WP_014480252.1 YqzE family protein -
  ACLQ7P_RS08255 (ACLQ7P_08255) yqzG 1616893..1617219 (-) 327 WP_026113671.1 YqzG/YhdC family protein -
  ACLQ7P_RS08260 (ACLQ7P_08260) tapA 1617490..1618245 (+) 756 WP_017696199.1 amyloid fiber anchoring/assembly protein TapA -
  ACLQ7P_RS08265 (ACLQ7P_08265) sipW 1618229..1618801 (+) 573 WP_072557060.1 signal peptidase I SipW -
  ACLQ7P_RS08270 (ACLQ7P_08270) tasA 1618866..1619651 (+) 786 WP_017696201.1 biofilm matrix protein TasA -
  ACLQ7P_RS08275 (ACLQ7P_08275) - 1619702..1620949 (-) 1248 WP_031600262.1 IS256-like element ISBsu2 family transposase -

Sequence

Protein


Download         Length: 126 a.a.        Molecular weight: 14243.42 Da        Isoelectric Point: 7.0493

>NTDB_id=1099702 ACLQ7P_RS08240 WP_121590957.1 1615846..1616226(+) (comGF) [Bacillus subtilis subsp. subtilis strain JCK-1398]
MLISGSLATIFHLFLSRQQEHGGFTQQEWMISIEQMMNECKESQAVKTAEHGSVLICTNLSGQDIRFEVYHSMVRKRVDG
KGHVPILDHITAMKADIENGVVLLKIEREKKVYQTSFPVYSYLGGG

Nucleotide


Download         Length: 381 bp        

>NTDB_id=1099702 ACLQ7P_RS08240 WP_121590957.1 1615846..1616226(+) (comGF) [Bacillus subtilis subsp. subtilis strain JCK-1398]
TTGCTCATATCAGGATCGTTAGCGACGATTTTCCATCTGTTTTTATCTCGACAGCAGGAGCATGGCGGTTTCACACAGCA
AGAATGGATGATTTCGATAGAACAGATGATGAATGAATGCAAGGAGTCACAGGCAGTTAAGACAGCCGAGCATGGGAGCG
TTTTAATTTGCACCAATCTTTCCGGGCAAGACATCCGTTTTGAAGTTTATCATTCTATGGTAAGAAAAAGAGTGGATGGC
AAAGGGCATGTTCCCATTTTAGATCATATTACAGCTATGAAAGCTGATATTGAAAATGGTGTTGTTTTGCTGAAAATTGA
GAGGGAGAAAAAAGTGTATCAAACTTCTTTTCCGGTTTATTCGTATTTAGGAGGAGGGTGA

Domains

Predicted by InterproScan.

Putative Competence protein ComGF (ComGF)

(16-110)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGF Bacillus subtilis subsp. subtilis str. 168

92.126

100

0.929

Multiple sequence alignment