Detailed information    

insolico Bioinformatically predicted

Overview


Name   tpc   Type   Machinery gene
Locus tag   ACM67B_RS08195 Genome accession   NZ_CP181247
Coordinates   1712502..1713506 (-) Length   334 a.a.
NCBI ID   WP_416189198.1    Uniprot ID   -
Organism   Neisseria sp. CCUG17229     
Function   DNA processing; DNA transport into the cytoplasm (predicted from homology)   
DNA processing DNA binding and uptake

Genomic Context


Location: 1707502..1718506
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACM67B_RS08160 (ACM67B_08160) - 1707941..1708216 (+) 276 WP_100563263.1 type B 50S ribosomal protein L31 -
  ACM67B_RS08165 (ACM67B_08165) ykgO 1708216..1708341 (+) 126 WP_002222621.1 type B 50S ribosomal protein L36 -
  ACM67B_RS08170 (ACM67B_08170) greB 1708527..1709018 (-) 492 WP_416189195.1 transcription elongation factor GreB -
  ACM67B_RS08175 (ACM67B_08175) - 1709120..1709893 (-) 774 WP_416188878.1 IS3 family transposase -
  ACM67B_RS08180 (ACM67B_08180) - 1709917..1710273 (-) 357 WP_416188879.1 helix-turn-helix domain-containing protein -
  ACM67B_RS08185 (ACM67B_08185) purF 1710362..1711897 (-) 1536 WP_416189196.1 amidophosphoribosyltransferase -
  ACM67B_RS08190 (ACM67B_08190) - 1711997..1712509 (-) 513 WP_416189197.1 CvpA family protein -
  ACM67B_RS08195 (ACM67B_08195) tpc 1712502..1713506 (-) 1005 WP_416189198.1 cell division protein FtsN Machinery gene
  ACM67B_RS08200 (ACM67B_08200) folC 1713519..1714796 (-) 1278 WP_416189199.1 bifunctional tetrahydrofolate synthase/dihydrofolate synthase -
  ACM67B_RS08205 (ACM67B_08205) - 1714855..1715307 (-) 453 WP_416189200.1 protein YgfX -
  ACM67B_RS08210 (ACM67B_08210) - 1715311..1715670 (-) 360 WP_095503640.1 hypothetical protein -
  ACM67B_RS08215 (ACM67B_08215) - 1715738..1716466 (-) 729 WP_095503639.1 amino acid ABC transporter ATP-binding protein -
  ACM67B_RS08220 (ACM67B_08220) - 1716497..1717066 (-) 570 WP_095503638.1 GTP pyrophosphokinase -
  ACM67B_RS08225 (ACM67B_08225) rsmA 1717081..1717860 (-) 780 WP_416189201.1 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA -

Sequence


Protein


Download         Length: 334 a.a.        Molecular weight: 36133.66 Da        Isoelectric Point: 10.2214

>NTDB_id=1099581 ACM67B_RS08195 WP_416189198.1 1712502..1713506(-) (tpc) [Neisseria sp. CCUG17229]
MSDDKQKEVLTGYEQLKRRNRRRLVMTSGLVVVAGILLASVLSTGNGDKEKSAAAPTAIAQNDVQGDPANAAVLEPSNKE
EAEAAAKEHKVAQSEHAEQPVEVWKPVAATPPQDVGAPLVLINDKLVDSDIKGLEESERIRKAEEEKRAAEEQKAEARRQ
RLAEQRAAKRAEEKRLAAEKEAAKKRAAAAKAEKSERDAEAERKQAEKVAAERKAKQAEEKKAAAAKAKAEADKKAAAQK
AEQAKSKSTEKAADSSSKGQKAAIQAGYADKERAQSLQRKMKAAGINATISEIKTDKGVVYRVKSNSYKSRQEAAKDLEK
LRSQNGIAGQIVNE

Nucleotide


Download         Length: 1005 bp        

>NTDB_id=1099581 ACM67B_RS08195 WP_416189198.1 1712502..1713506(-) (tpc) [Neisseria sp. CCUG17229]
ATGTCTGACGATAAGCAAAAAGAAGTTTTAACCGGCTATGAGCAGCTCAAACGCCGCAATCGCCGCCGCTTGGTGATGAC
GTCAGGATTGGTCGTGGTTGCCGGTATTTTATTGGCTTCAGTATTGAGCACGGGTAACGGCGACAAAGAAAAATCAGCTG
CGGCACCGACTGCGATTGCACAAAATGATGTGCAAGGAGATCCGGCCAACGCTGCTGTGTTGGAGCCGAGCAATAAGGAA
GAGGCTGAAGCAGCAGCTAAAGAGCATAAGGTTGCCCAAAGCGAGCATGCTGAGCAGCCGGTGGAGGTATGGAAACCTGT
TGCCGCCACCCCGCCGCAGGATGTCGGAGCACCATTAGTGTTGATTAACGATAAATTGGTTGACAGTGACATCAAAGGCT
TGGAAGAGTCGGAGCGCATCCGTAAAGCCGAAGAAGAAAAACGTGCAGCAGAAGAGCAGAAAGCTGAAGCCCGCCGCCAA
CGTTTGGCGGAACAGCGTGCAGCCAAGCGCGCTGAAGAGAAACGTTTAGCAGCGGAAAAAGAAGCTGCTAAAAAACGCGC
TGCAGCAGCCAAGGCTGAGAAATCAGAACGTGATGCAGAAGCCGAACGCAAGCAGGCAGAAAAAGTCGCTGCCGAGCGTA
AAGCCAAACAAGCTGAAGAGAAAAAAGCAGCTGCGGCCAAAGCCAAAGCAGAAGCCGATAAAAAAGCTGCCGCCCAAAAA
GCGGAACAGGCTAAATCTAAGTCGACTGAAAAAGCTGCAGATAGCAGCTCTAAAGGCCAAAAAGCCGCCATTCAGGCCGG
TTATGCCGATAAAGAGCGTGCTCAAAGTCTGCAACGCAAAATGAAAGCAGCCGGCATCAATGCCACCATCAGCGAAATCA
AAACCGATAAAGGTGTGGTTTACCGTGTGAAATCAAATTCATATAAGAGTCGCCAAGAAGCGGCGAAAGATTTGGAAAAA
TTGCGTTCTCAAAACGGCATCGCAGGACAGATTGTGAATGAGTAA

Domains


Predicted by InterproScan.

(262-332)


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tpc Neisseria gonorrhoeae MS11

46.196

100

0.509


Multiple sequence alignment