Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   ACM67B_RS05705 Genome accession   NZ_CP181247
Coordinates   1192396..1193775 (+) Length   459 a.a.
NCBI ID   WP_416188831.1    Uniprot ID   -
Organism   Neisseria sp. CCUG17229     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1187396..1198775
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACM67B_RS05680 (ACM67B_05680) - 1188335..1189195 (-) 861 WP_416188826.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase -
  ACM67B_RS05685 (ACM67B_05685) - 1189327..1189944 (-) 618 WP_416188827.1 glutathione S-transferase family protein -
  ACM67B_RS05690 (ACM67B_05690) - 1190042..1190242 (-) 201 WP_416188828.1 hypothetical protein -
  ACM67B_RS05695 (ACM67B_05695) - 1190424..1190570 (-) 147 WP_416188829.1 hypothetical protein -
  ACM67B_RS05700 (ACM67B_05700) - 1190680..1192107 (-) 1428 WP_416188830.1 acyl-CoA dehydrogenase family protein -
  ACM67B_RS05705 (ACM67B_05705) radA 1192396..1193775 (+) 1380 WP_416188831.1 DNA repair protein RadA Machinery gene
  ACM67B_RS05710 (ACM67B_05710) - 1193833..1194324 (-) 492 WP_416188832.1 DUF302 domain-containing protein -
  ACM67B_RS05715 (ACM67B_05715) - 1194394..1194762 (-) 369 WP_416188833.1 rhodanese-like domain-containing protein -
  ACM67B_RS05720 (ACM67B_05720) - 1194852..1196258 (-) 1407 WP_416188834.1 dihydrolipoyl dehydrogenase -
  ACM67B_RS05725 (ACM67B_05725) - 1196477..1197214 (-) 738 WP_416188835.1 glutathione peroxidase -
  ACM67B_RS05730 (ACM67B_05730) - 1197391..1198167 (-) 777 WP_416188836.1 1-acylglycerol-3-phosphate O-acyltransferase -

Sequence

Protein


Download         Length: 459 a.a.        Molecular weight: 49384.82 Da        Isoelectric Point: 6.6041

>NTDB_id=1099573 ACM67B_RS05705 WP_416188831.1 1192396..1193775(+) (radA) [Neisseria sp. CCUG17229]
MAKAPKTVYQCTECGGTSPKWQGKCPHCGEWNTLQESLAAPEPKNARFQSWAADTSSVQSLSAVTATEVPRNPTGMGELD
RVLGGGLVDGAVILLGGDPGIGKSTLLLQTIAKMAQTRKVLYVSGEESAQQVALRAQRLDLPTDGVNLLAEIRMEAIQTA
LKQHEPEVVVIDSIQTMYSDQITSAPGSVSQVRECAAQLTRMAKQMGIAMILVGHVTKDGAIAGPRVLEHMVDTVLYFEG
DQHSNYRMIRAIKNRFGAANELGVFAMTETGLKGVSNPSAIFLASYRDDVPGSCVLVTQEGSRPLLVEIQALVDDAHGFT
PKRLTVGLEQNRLSMLLAVLNRHGGIACFDQDVFLNAVGGVKIGEPAADLAVILAMLSSFRNRPLPEKMVAFGEIGLSGE
VRPVARGQERLKEAEKLGFKRAIVPKANMPRNVKEFPNLEIFGVGSLQEAIDVCRNAQD

Nucleotide


Download         Length: 1380 bp        

>NTDB_id=1099573 ACM67B_RS05705 WP_416188831.1 1192396..1193775(+) (radA) [Neisseria sp. CCUG17229]
ATGGCAAAAGCACCGAAAACTGTTTACCAATGCACTGAATGCGGTGGCACCTCTCCCAAATGGCAAGGCAAATGCCCGCA
TTGCGGCGAGTGGAATACTTTGCAGGAAAGTTTGGCCGCGCCCGAACCGAAAAACGCGCGTTTCCAATCGTGGGCAGCGG
ATACCTCGAGCGTGCAATCTTTATCGGCCGTGACCGCAACCGAAGTGCCGCGCAACCCGACCGGCATGGGCGAACTCGAC
CGCGTATTGGGCGGCGGTTTGGTTGATGGCGCGGTGATTTTGTTGGGCGGCGATCCGGGCATCGGCAAATCGACCCTGCT
GTTGCAAACCATCGCCAAAATGGCGCAAACGCGCAAAGTTTTATATGTATCGGGTGAGGAATCCGCACAACAAGTCGCTT
TGCGCGCGCAGCGTTTGGACTTGCCGACCGATGGCGTGAATCTGTTGGCCGAAATCCGCATGGAAGCGATTCAGACGGCC
TTAAAGCAGCATGAGCCGGAAGTGGTGGTCATCGATTCGATTCAAACCATGTATTCCGACCAAATCACGTCTGCACCCGG
CTCCGTGTCGCAAGTGCGCGAATGTGCCGCTCAACTCACCCGCATGGCCAAACAAATGGGCATCGCCATGATTTTGGTCG
GCCACGTTACCAAAGATGGTGCAATTGCCGGCCCGCGTGTGTTGGAGCATATGGTCGATACGGTGCTGTATTTTGAGGGC
GACCAGCATTCCAATTACCGCATGATACGCGCGATTAAAAACCGCTTCGGTGCCGCCAATGAGTTGGGCGTATTTGCGAT
GACGGAAACCGGCTTGAAAGGTGTGTCGAACCCGTCGGCGATTTTTTTGGCCAGCTATCGCGACGATGTGCCGGGCTCGT
GTGTATTGGTCACACAGGAAGGCTCACGGCCTTTATTGGTGGAAATCCAAGCCTTGGTCGATGATGCCCACGGTTTCACG
CCCAAACGCCTCACCGTCGGCCTTGAACAAAACCGCCTGTCCATGCTGCTGGCCGTGCTAAACCGCCACGGCGGCATTGC
CTGCTTCGATCAGGATGTGTTTCTCAACGCCGTCGGCGGCGTGAAAATCGGAGAACCCGCCGCCGACTTGGCCGTAATTC
TCGCCATGCTTTCCAGCTTCCGCAACCGCCCTTTGCCGGAAAAAATGGTCGCCTTTGGGGAAATCGGTTTGAGCGGCGAA
GTACGCCCTGTTGCCCGCGGTCAGGAACGCTTAAAAGAAGCGGAAAAACTCGGCTTCAAACGCGCCATCGTGCCAAAAGC
CAATATGCCGCGCAATGTGAAAGAATTTCCGAATTTGGAGATTTTCGGCGTGGGCAGCTTGCAAGAAGCAATTGATGTCT
GCCGTAATGCGCAAGATTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(366-428)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)

AAA domain (AAA_25)

(82-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

50

99.782

0.499
  radA Streptococcus mitis NCTC 12261

47.672

98.257

0.468
  radA Streptococcus pneumoniae Rx1

47.45

98.257

0.466
  radA Streptococcus pneumoniae D39

47.45

98.257

0.466
  radA Streptococcus pneumoniae R6

47.45

98.257

0.466
  radA Streptococcus pneumoniae TIGR4

47.45

98.257

0.466
  radA Streptococcus mitis SK321

47.45

98.257

0.466

Multiple sequence alignment