Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD   Type   Machinery gene
Locus tag   ACM67B_RS04725 Genome accession   NZ_CP181247
Coordinates   994054..995793 (+) Length   579 a.a.
NCBI ID   WP_416190361.1    Uniprot ID   -
Organism   Neisseria sp. CCUG17229     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 989054..1000793
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACM67B_RS04700 (ACM67B_04700) - 989105..990634 (+) 1530 WP_416190357.1 SurA N-terminal domain-containing protein -
  ACM67B_RS04705 (ACM67B_04705) recR 990714..991319 (+) 606 WP_416190358.1 recombination mediator RecR -
  ACM67B_RS04710 (ACM67B_04710) - 991389..991676 (-) 288 WP_095503192.1 hypothetical protein -
  ACM67B_RS04715 (ACM67B_04715) - 991894..993144 (+) 1251 WP_416190359.1 lipoprotein-releasing ABC transporter permease subunit -
  ACM67B_RS04720 (ACM67B_04720) lolD 993137..993817 (+) 681 WP_416190360.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  ACM67B_RS04725 (ACM67B_04725) recD 994054..995793 (+) 1740 WP_416190361.1 exodeoxyribonuclease V subunit alpha Machinery gene
  ACM67B_RS04730 (ACM67B_04730) - 996178..997314 (+) 1137 WP_416190362.1 hypothetical protein -
  ACM67B_RS04735 (ACM67B_04735) - 997751..998152 (-) 402 WP_416190363.1 RNA-binding S4 domain-containing protein -
  ACM67B_RS04740 (ACM67B_04740) - 998373..999332 (+) 960 WP_095503186.1 acetyl-CoA carboxylase carboxyltransferase subunit alpha -
  ACM67B_RS04745 (ACM67B_04745) tilS 999422..1000753 (+) 1332 WP_416190364.1 tRNA lysidine(34) synthetase TilS -

Sequence

Protein


Download         Length: 579 a.a.        Molecular weight: 64198.39 Da        Isoelectric Point: 6.3424

>NTDB_id=1099570 ACM67B_RS04725 WP_416190361.1 994054..995793(+) (recD) [Neisseria sp. CCUG17229]
MNAPIDLNQAAALAATQFLQHYALEDAVVVTPYVEALFSALQSGHSFIWVSDKEAAALKRAVLVVGTDGETPLVLNGRRL
FLGRLWQLEHDLAVEIKRLATASVDDVDWLQASQNLQNWFAEKGSEGQRDAAGLALLQAFMLITGGPGTGKTTTVAKLLG
LICDNATSLPRIALAAPTGKAAAHMARALHRALDRFDLPERIKQHLLLLEGQTVHRLLKLRPPQMQSAFHAQQPLPLDVL
VVDEASMLDLSLLLQLLKAIPSGCRVIFLGDEFQLPSVGVGAVLAALSRETVLDEDTHRRLSEYLPQHTFKVAEHPPALS
QNIAHLQVSHRFGTDSGIGCLARAVVSGDSETAWAQFERFPDELQVLHADMKHQAEYLYHKHEKYWQAVESGNVALAFGH
AADVVVLTAWRQDAENFNQAYFRHLQAQQRISGDMPWFAGQMIMVTRNDYALDVFNGDIGLIMQDGESANGLAAYFPFAD
SFRKIPISRLPAFETAFAMTVHKSQGSEYREVWLLPPSIDMANESDDVLNSLNNALLYTGITRAQKRFVFWGNKKIFEWA
VKTQKKRQTALDEIINALF

Nucleotide


Download         Length: 1740 bp        

>NTDB_id=1099570 ACM67B_RS04725 WP_416190361.1 994054..995793(+) (recD) [Neisseria sp. CCUG17229]
ATGAATGCGCCCATCGATTTGAACCAAGCAGCGGCCTTGGCTGCAACCCAGTTTTTGCAACACTACGCGCTCGAAGATGC
GGTGGTGGTGACCCCTTATGTTGAAGCCTTGTTTAGCGCGCTGCAAAGCGGGCATTCGTTTATCTGGGTCAGCGATAAAG
AAGCGGCAGCCTTGAAACGTGCTGTTTTGGTGGTGGGCACCGATGGTGAAACGCCGCTGGTGCTGAACGGGCGGCGTTTG
TTTTTGGGCAGGCTTTGGCAGTTGGAACACGATTTAGCGGTTGAAATCAAGCGGCTGGCCACAGCCTCTGTTGATGATGT
TGATTGGCTGCAGGCTTCGCAAAATCTGCAAAACTGGTTTGCCGAAAAAGGCAGCGAAGGACAGCGCGATGCCGCCGGTT
TGGCTTTGCTGCAAGCGTTTATGCTGATTACCGGCGGGCCGGGTACCGGTAAAACGACCACAGTCGCCAAATTATTGGGC
TTGATTTGCGACAATGCCACCAGTTTACCGCGCATTGCTTTGGCTGCCCCGACAGGCAAAGCAGCTGCGCATATGGCACG
CGCGCTGCATCGTGCTTTAGATCGCTTTGACTTGCCTGAACGTATCAAGCAGCATTTGTTGCTCTTGGAAGGCCAAACCG
TGCATCGCCTATTGAAGCTGCGCCCACCGCAAATGCAATCGGCCTTTCATGCGCAACAGCCTTTGCCTTTGGATGTGTTG
GTGGTGGATGAAGCATCGATGCTCGATTTATCGCTGTTGTTGCAATTGCTCAAAGCCATTCCGAGCGGTTGCCGCGTAAT
CTTTTTGGGGGATGAATTTCAATTGCCGTCGGTTGGTGTGGGCGCAGTATTGGCCGCCTTATCGCGCGAAACCGTTTTGG
ATGAAGACACTCATCGCCGTTTAAGCGAATATTTGCCGCAGCATACATTTAAAGTTGCCGAACATCCGCCGGCTTTATCG
CAAAACATCGCCCATTTGCAGGTTAGCCACCGTTTTGGTACGGATAGCGGCATCGGTTGCTTGGCGCGGGCAGTGGTTTC
AGGTGACAGTGAAACAGCGTGGGCGCAGTTTGAACGCTTTCCGGATGAATTGCAGGTATTGCATGCCGACATGAAACACC
AAGCCGAATACTTGTATCACAAGCATGAAAAATACTGGCAGGCAGTCGAGAGCGGCAATGTGGCGCTGGCATTCGGCCAT
GCGGCGGATGTGGTGGTGTTAACGGCTTGGCGCCAAGATGCGGAAAACTTTAATCAGGCTTATTTCCGCCATTTACAGGC
TCAACAGCGTATATCGGGCGACATGCCGTGGTTTGCCGGACAAATGATTATGGTCACGCGCAATGATTATGCGTTGGATG
TGTTCAATGGCGACATCGGCCTGATTATGCAGGATGGCGAATCAGCTAATGGCTTGGCGGCGTATTTTCCGTTTGCAGAC
AGTTTCAGAAAAATCCCAATCAGTCGGCTGCCGGCTTTTGAAACAGCATTTGCCATGACCGTGCATAAAAGCCAAGGTTC
AGAATATCGGGAAGTGTGGTTGCTGCCGCCGAGTATTGATATGGCCAATGAAAGTGATGACGTGTTAAACAGCTTAAATA
ATGCGCTGTTGTACACAGGTATCACTCGTGCGCAGAAGCGTTTTGTGTTTTGGGGCAACAAAAAAATCTTTGAATGGGCA
GTAAAAACCCAGAAAAAGCGTCAAACAGCCTTAGATGAAATAATTAATGCCTTGTTTTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_30)

(125-294)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(496-547)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD Neisseria gonorrhoeae strain FA1090

61.456

97.237

0.598

Multiple sequence alignment