Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   ACM67B_RS00030 Genome accession   NZ_CP181247
Coordinates   6594..8294 (+) Length   566 a.a.
NCBI ID   WP_416189641.1    Uniprot ID   -
Organism   Neisseria sp. CCUG17229     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1594..13294
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACM67B_RS00015 (ACM67B_00015) murA 3028..4281 (-) 1254 WP_416189639.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  ACM67B_RS00020 (ACM67B_00020) - 4476..5801 (-) 1326 WP_416190566.1 murein transglycosylase A -
  ACM67B_RS00025 (ACM67B_00025) - 6239..6421 (+) 183 WP_416189640.1 hypothetical protein -
  ACM67B_RS00030 (ACM67B_00030) pilA 6594..8294 (+) 1701 WP_416189641.1 signal recognition particle-docking protein FtsY Machinery gene
  ACM67B_RS00035 (ACM67B_00035) - 8471..8737 (+) 267 WP_100562778.1 DUF3079 domain-containing protein -
  ACM67B_RS00040 (ACM67B_00040) rarD 8846..9751 (+) 906 WP_416189642.1 EamA family transporter RarD -
  ACM67B_RS00045 (ACM67B_00045) - 9897..10595 (+) 699 WP_416189643.1 M15 family metallopeptidase -
  ACM67B_RS00050 (ACM67B_00050) - 10684..11895 (+) 1212 WP_416189644.1 DUF819 domain-containing protein -

Sequence

Protein


Download         Length: 566 a.a.        Molecular weight: 61139.31 Da        Isoelectric Point: 4.0321

>NTDB_id=1099557 ACM67B_RS00030 WP_416189641.1 6594..8294(+) (pilA) [Neisseria sp. CCUG17229]
MFDFFRRKKQETPAPEEAVKPELQHTEQNAAAEPTQSVEEMLAALENAFAKEAAEKAQAAPPIEEISVEPIENQSVEEEI
LAQKSPTETLIDDVQVEAEAPVEMPFEHIAAQVEVADDVSIEDENTEEIVLTDDGKVVIDYVQVPEGTEVVSVTPEQAEA
IANEQESAAEMTEDTSSTESNIQPEEAEIQTWETTFPEAETAQTQAAEAEPAEAVQVQENVETEEVKADELSEETPSESV
AATAAATTAVAAQTAAEEDQAQTKLSWASRLKQGLTKSRDKMAKSLAGVFGGGKIDEDLYEELETVLITSDMGMEATNYL
MKDVRDRVSLKGLKDGEELRGALKDAIYDLIKPLEQPLVLPESKEPFVIMLAGINGAGKTTSIGKLAKYFQSQGKSVLLA
AGDTFRAAAREQLQEWGERNNVTVISQSTGDSAAVCFDAVQAAKARGIDIVLADTAGRLPTQLHLMEEIKKVKRVLQKAM
PDAPHEIIVVLDANIGQNAVNQVKAFDEALGLTGLIVTKLDGTAKGGILAALASNRPIPVRYIGVGERIDDLRPFDARAF
VDALLD

Nucleotide


Download         Length: 1701 bp        

>NTDB_id=1099557 ACM67B_RS00030 WP_416189641.1 6594..8294(+) (pilA) [Neisseria sp. CCUG17229]
ATGTTCGATTTCTTCCGCCGCAAAAAACAGGAAACTCCCGCTCCCGAAGAAGCGGTTAAACCCGAGCTCCAACACACCGA
ACAAAACGCCGCCGCTGAGCCGACCCAGTCGGTAGAAGAAATGCTGGCGGCACTGGAAAATGCGTTTGCCAAAGAAGCAG
CAGAGAAAGCGCAGGCCGCGCCACCGATCGAAGAAATTTCTGTTGAACCTATTGAAAATCAATCAGTTGAAGAAGAAATT
TTAGCGCAAAAATCGCCAACTGAAACGCTGATTGATGATGTTCAAGTGGAAGCAGAAGCGCCTGTCGAAATGCCGTTTGA
GCATATCGCGGCGCAAGTTGAAGTGGCGGATGATGTTTCTATTGAAGACGAGAACACAGAAGAAATCGTCTTAACCGACG
ATGGCAAAGTGGTGATTGATTATGTGCAAGTGCCGGAAGGCACCGAAGTGGTTTCGGTGACACCGGAGCAGGCGGAAGCC
ATTGCCAATGAGCAGGAGTCTGCGGCTGAAATGACTGAAGATACGTCATCAACAGAATCGAACATTCAGCCAGAAGAAGC
GGAAATTCAAACTTGGGAAACCACGTTCCCCGAAGCAGAAACGGCACAAACCCAAGCAGCGGAAGCCGAGCCTGCAGAAG
CGGTTCAGGTGCAGGAAAATGTTGAAACTGAAGAAGTTAAGGCAGATGAATTATCTGAAGAAACGCCGTCTGAAAGCGTA
GCGGCCACTGCGGCGGCAACGACAGCCGTCGCCGCGCAAACTGCGGCAGAAGAAGACCAAGCGCAAACCAAATTAAGCTG
GGCTTCGCGCTTGAAACAAGGTTTGACCAAATCGCGCGATAAAATGGCCAAATCGCTGGCAGGCGTGTTCGGCGGCGGCA
AAATCGACGAAGATTTGTATGAAGAATTGGAAACCGTGCTGATTACCAGCGACATGGGCATGGAAGCGACCAATTATCTG
ATGAAAGACGTACGCGACCGCGTCAGCCTGAAAGGCTTGAAAGATGGCGAAGAATTGCGCGGTGCGTTGAAAGATGCGAT
TTACGATTTGATTAAACCTTTGGAGCAGCCTTTGGTGTTGCCTGAAAGCAAAGAGCCGTTTGTGATTATGTTGGCAGGCA
TCAACGGCGCGGGCAAAACCACGTCTATCGGCAAGCTGGCGAAATATTTCCAATCGCAGGGCAAATCGGTGCTATTGGCG
GCGGGCGATACGTTCCGTGCTGCGGCGCGTGAGCAGTTGCAGGAATGGGGCGAGCGCAACAACGTGACCGTGATTTCGCA
ATCCACCGGCGATTCGGCGGCGGTGTGTTTCGATGCGGTGCAGGCCGCCAAAGCGCGCGGTATTGATATTGTGCTGGCCG
ATACCGCCGGCCGCTTGCCGACCCAGTTGCACCTGATGGAAGAAATCAAAAAAGTAAAACGCGTGCTGCAAAAAGCCATG
CCCGATGCGCCGCACGAAATCATCGTCGTGTTGGATGCCAACATCGGCCAAAACGCGGTTAACCAAGTGAAAGCCTTCGA
TGAAGCTTTGGGCTTGACCGGCCTGATTGTGACCAAGCTCGATGGCACGGCCAAAGGCGGCATTCTCGCTGCGCTGGCCA
GCAACCGTCCGATTCCGGTGCGCTACATCGGTGTGGGCGAACGCATCGATGACTTGCGCCCGTTTGACGCGCGGGCATTT
GTGGATGCATTGCTGGATTGA

Domains

Predicted by InterproScan.

SRP54-type protein, helical bundle domain (SRP54_N)

(281-346)

SRP54-type protein, GTPase domain (SRP54)

(366-565)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

75.55

72.261

0.546

Multiple sequence alignment