Detailed information NTG0109955

Bioinformatically predicted

Overview

• Name: clpC
• Type: Regulator
• Locus tag: HW01_RS23845
• Genome accession: NZ_CP008866
• Coordinates: 5029257..5032106 (+)
• Length: 949 a.a.
• NCBI ID: WP_023093170.1
• Uniprot ID: -
• Organism: Pseudomonas aeruginosa strain T38079
• Function: degradation of ComK; degradation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 5024257..5037106

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HW01_RS32395	-	5024930..5025361 (+)	432	WP_170288398.1	ExbD/TolR family protein	-
HW01_RS23815 (HW01_24195)	-	5025531..5026439 (+)	909	WP_023093167.1	LysR family transcriptional regulator	-
HW01_RS23820 (HW01_32730)	-	5026436..5027008 (-)	573	Protein_4627	LysR family transcriptional regulator	-
HW01_RS23825 (HW01_32735)	-	5027148..5027577 (+)	430	Protein_4628	IS66 family transposase	-
HW01_RS33245 (HW01_24185)	-	5027699..5027932 (-)	234	Protein_4629	IS110 family transposase	-
HW01_RS23835 (HW01_24180)	-	5028277..5028558 (+)	282	WP_031642515.1	helix-turn-helix domain-containing protein	-
HW01_RS23840 (HW01_24175)	-	5028594..5029163 (+)	570	WP_008906266.1	Hsp20/alpha crystallin family protein	-
HW01_RS23845 (HW01_24170)	clpC	5029257..5032106 (+)	2850	WP_023093170.1	heat shock survival AAA family ATPase ClpK	Regulator
HW01_RS23850 (HW01_24165)	cls	5032124..5033554 (+)	1431	WP_023093171.1	cardiolipin synthase	-
HW01_RS23855 (HW01_24160)	ftsH	5033582..5035465 (+)	1884	WP_023093172.1	ATP-dependent zinc metalloprotease FtsH	-
HW01_RS23860 (HW01_24155)	trxC	5035462..5035902 (+)	441	WP_023093173.1	thioredoxin TrxC	-

Sequence

Protein

• Length: 949 a.a.
• Molecular weight: 104564.66 Da
• Isoelectric Point: 5.9683

>NTDB_id=109955 HW01_RS23845 WP_023093170.1 5029257..5032106(+) (clpC) [Pseudomonas aeruginosa strain T38079]
MARKQCQVCGQPATVRVEANLNGRHSTMLLCDDHYRQLVRQQKRTVSPLEALFGSRSGLFEDFLGSDFFRIGDDAPSMAA
DTDEVVDASFGEPAPAGTGTARRRGSGLASRISEQSEALLQEAARHAAEFGRAEVDTEHLLLALSDSDVVKTILGQFKIK
VDDLKRQIESEAKRGDKPFEGEIGVSPRVKDALSRAFVASNELGHSYVGPEHFLIGLAEEGEGLAANLLRRYGLTPQALR
QQVSKVVGKGAEDGRAETPTNTPELDKYSRDLTKMAREGKLDPVIGRAQEIETTIEVLARRKKNNPVLIGEPGVGKTAIV
EGLAQRMVAGEVPETLRDKRLVELNINAMVAGAKYRGEFEERVQKVLKEVTEHQGELILFIDEVHTIVGAGQGGGEGGLD
VANVFKPMMARGELNLIGATTLNEYQKYIEKDAALERRFQPVMVPEPTVAQTMMILRGLRDTFEAHHKVSITEDAIIAAA
ELSDRYITARFLPDKAIDLLDQAAARVKLSATARPVAVQELESELHQLRREQDYVASRKQYDKAAELGKRIEAKEAELKK
LVEDWERERASGSAEVKAEHVAQIVSRLTGIPVNELTVEEREKLLHLEQRLHERLVGQDEAVRAVADAVRLSRAGLREGS
KPVATFLFLGPTGVGKTELAKALAESIYGDEGALLRIDMSEYGERHTVARLVGAPPGYVGYDEGGQLTEKVRRKPYSVLL
LDEIEKAHPDVYNILLQVFDDGRLTDGKGRVVDFTNAIIIATSNLGSDIIQRRLKARGAAGEEYEKTKSEVMDVLRGHFR
PEFLNRIDEIIVFHALGKEEIRHIVGLQLDRVARNAASQGVTLTFDQTLIDHFAEEGYKPEFGARELKRLIRSELETALA
REMLGGGIGKGDHASARWDEKAERVVFERKEPPVKPVEPEKPDAAKVAEAPSSDESKATRKKKPAGGQS

Nucleotide

• Length: 2850 bp

>NTDB_id=109955 HW01_RS23845 WP_023093170.1 5029257..5032106(+) (clpC) [Pseudomonas aeruginosa strain T38079]
ATGGCCAGAAAACAATGCCAAGTTTGCGGCCAGCCCGCCACGGTGCGGGTGGAAGCCAATCTCAATGGACGCCACAGCAC
CATGCTGTTGTGTGACGATCACTATCGCCAACTGGTGCGCCAGCAAAAGCGCACCGTCTCACCGCTGGAAGCCTTGTTCG
GCTCGCGCAGCGGGCTGTTCGAAGACTTCCTTGGCAGCGACTTCTTCCGCATCGGTGACGACGCACCGTCCATGGCGGCC
GATACCGACGAGGTCGTCGATGCCTCGTTCGGCGAACCCGCCCCGGCCGGTACGGGCACCGCGCGCCGTCGCGGCAGTGG
GCTCGCCAGCCGTATCAGCGAACAGTCCGAGGCCCTGTTGCAGGAGGCCGCCCGACACGCTGCAGAGTTCGGGCGCGCCG
AAGTCGATACCGAACACCTGCTGCTGGCGCTATCCGACAGCGACGTGGTCAAGACCATCCTGGGGCAGTTCAAGATCAAG
GTCGATGACCTCAAGCGCCAGATCGAATCCGAAGCCAAGCGCGGCGATAAGCCGTTCGAGGGCGAGATCGGCGTGTCGCC
CCGGGTCAAGGACGCGCTCAGCCGTGCTTTCGTGGCCTCCAACGAACTCGGCCACTCTTATGTCGGGCCGGAGCATTTCC
TGATCGGGCTCGCCGAGGAAGGCGAAGGTTTGGCGGCCAACCTGCTGCGCCGTTACGGCCTCACGCCGCAAGCGCTGCGC
CAGCAGGTAAGCAAGGTGGTCGGCAAAGGGGCCGAGGATGGCCGCGCCGAGACGCCGACCAACACGCCGGAACTCGACAA
GTATTCGCGCGACCTCACCAAGATGGCGCGCGAGGGCAAGCTCGATCCGGTCATCGGCCGCGCGCAGGAGATCGAGACGA
CCATCGAAGTGCTGGCCCGGCGCAAGAAGAACAACCCGGTGCTGATCGGCGAGCCCGGCGTCGGCAAGACCGCCATCGTC
GAAGGGCTGGCGCAGCGCATGGTCGCCGGCGAAGTGCCCGAGACGCTGCGCGACAAGCGCCTGGTGGAACTCAACATCAA
TGCCATGGTGGCCGGCGCCAAGTACCGCGGCGAGTTCGAGGAGCGCGTGCAGAAGGTGCTCAAGGAAGTGACCGAGCACC
AGGGTGAGCTGATTCTCTTCATCGACGAGGTGCACACCATCGTCGGTGCCGGCCAGGGTGGCGGCGAAGGCGGGCTGGAC
GTGGCCAACGTGTTCAAGCCGATGATGGCGCGCGGCGAACTGAACCTGATCGGCGCCACCACGCTCAACGAGTATCAGAA
GTACATCGAGAAGGACGCCGCGCTGGAGCGTCGCTTCCAGCCGGTGATGGTGCCCGAGCCGACCGTGGCGCAGACCATGA
TGATCCTGCGCGGCCTGCGCGACACCTTCGAGGCGCACCACAAGGTCAGCATCACCGAGGATGCGATCATCGCCGCCGCC
GAGTTGTCGGACCGTTACATCACCGCGCGCTTTTTGCCCGACAAGGCCATCGACCTGCTCGACCAGGCAGCCGCACGCGT
GAAGCTGTCGGCCACGGCGCGCCCGGTGGCGGTGCAAGAGCTGGAGTCCGAACTGCATCAGTTGCGGCGTGAGCAGGACT
ATGTGGCTTCGCGCAAGCAGTACGACAAGGCCGCCGAGCTCGGCAAGCGCATCGAGGCCAAAGAGGCCGAACTAAAGAAG
CTCGTCGAGGATTGGGAGCGCGAGCGCGCCTCGGGCAGCGCCGAGGTCAAGGCAGAGCACGTGGCGCAGATCGTCTCGCG
GCTGACCGGCATCCCGGTCAATGAGCTGACGGTGGAAGAACGCGAGAAGCTGCTGCATCTGGAACAGCGGCTGCATGAGC
GCCTGGTGGGACAGGACGAAGCAGTACGTGCCGTGGCCGATGCCGTGCGGCTGTCGCGCGCGGGCCTGCGCGAAGGCAGC
AAGCCGGTGGCGACTTTTCTGTTCCTCGGGCCGACCGGCGTGGGCAAGACCGAGCTCGCCAAGGCGCTGGCCGAGTCCAT
CTATGGCGATGAAGGTGCGCTGCTGCGCATCGACATGTCCGAGTACGGGGAACGCCATACCGTGGCACGCCTGGTGGGCG
CGCCTCCGGGTTATGTGGGCTATGACGAGGGCGGCCAGCTCACCGAGAAGGTGCGTCGCAAGCCCTACAGCGTGTTGCTG
CTGGACGAGATCGAGAAGGCTCACCCCGACGTCTACAACATCCTGCTGCAGGTGTTCGACGACGGGCGGCTCACCGACGG
CAAGGGCCGGGTGGTGGATTTCACCAATGCCATCATCATCGCCACCTCGAATTTGGGCTCGGACATCATCCAGCGTCGGC
TGAAGGCCCGTGGCGCCGCCGGCGAGGAATACGAGAAGACCAAGTCCGAGGTGATGGACGTGCTGCGCGGACACTTCCGC
CCCGAGTTCCTCAACCGCATCGACGAGATCATCGTCTTCCATGCGCTGGGCAAGGAGGAGATCCGCCATATCGTCGGCCT
GCAGCTCGATCGTGTGGCCCGCAACGCCGCCAGCCAGGGCGTGACGCTGACCTTCGATCAGACCTTGATCGATCACTTCG
CGGAGGAAGGCTACAAGCCGGAATTCGGCGCGCGCGAGCTCAAGCGGCTGATCCGCAGCGAGCTGGAGACTGCGCTGGCG
CGCGAGATGCTCGGTGGCGGCATCGGCAAGGGCGATCACGCCAGCGCTCGCTGGGATGAAAAGGCCGAGCGGGTGGTTTT
CGAGCGCAAGGAGCCACCAGTGAAGCCGGTCGAGCCTGAAAAGCCTGATGCCGCGAAAGTGGCAGAGGCGCCGTCGAGCG
ACGAAAGCAAGGCTACGCGCAAGAAAAAGCCGGCGGGCGGCCAATCTTGA

Domains

Predicted by InterProScan.

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (816-894)

• AAA lid domain (AAA_lid_9) (449-547)

• ATPase family associated with various cellular activities (AAA) (AAA) (307-440)

• AAA domain (Cdc48 subfamily) (AAA_2) (641-810)

• Clp amino terminal domain, pathogenicity island component (Clp_N) (123-171)

• Clp amino terminal domain, pathogenicity island component (Clp_N) (199-248)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpC	Bacillus subtilis subsp. subtilis str. 168	50.943	83.772	0.427
clpC	Lactococcus lactis subsp. lactis strain DGCC12653	43.881	85.248	0.374
clpC	Streptococcus thermophilus LMD-9	41.959	87.144	0.366
clpC	Streptococcus thermophilus LMG 18311	41.99	86.828	0.365
clpC	Streptococcus mutans UA159	42.105	86.091	0.362