Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   ACM67C_RS04535 Genome accession   NZ_CP181246
Coordinates   936369..938531 (-) Length   720 a.a.
NCBI ID   WP_082790398.1    Uniprot ID   -
Organism   Bergeriella denitrificans strain DSM 17675     
Function   DNA processing; DNA transport into the cytoplasm (predicted from homology)   
DNA processing DNA binding and uptake

Genomic Context

Location: 931369..943531
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACM67C_RS04510 (ACM67C_04510) rplU 931920..932228 (+) 309 WP_115225383.1 50S ribosomal protein L21 -
  ACM67C_RS04515 (ACM67C_04515) rpmA 932256..932525 (+) 270 WP_066080875.1 50S ribosomal protein L27 -
  ACM67C_RS04520 (ACM67C_04520) - 932997..933647 (-) 651 WP_066076951.1 hypothetical protein -
  ACM67C_RS04525 (ACM67C_04525) - 933754..934101 (+) 348 WP_066076954.1 ArsC family reductase -
  ACM67C_RS04530 (ACM67C_04530) - 934220..936031 (+) 1812 WP_066076958.1 SurA N-terminal domain-containing protein -
  ACM67C_RS04535 (ACM67C_04535) comA 936369..938531 (-) 2163 WP_082790398.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  ACM67C_RS04540 (ACM67C_04540) - 938681..939478 (-) 798 WP_066076959.1 Cof-type HAD-IIB family hydrolase -
  ACM67C_RS04545 (ACM67C_04545) - 939586..940407 (+) 822 WP_066076963.1 alpha/beta hydrolase -
  ACM67C_RS04550 (ACM67C_04550) purF 940489..942027 (-) 1539 WP_066076966.1 amidophosphoribosyltransferase -
  ACM67C_RS04555 (ACM67C_04555) - 942278..942787 (-) 510 WP_066076969.1 CvpA family protein -

Sequence

Protein


Download         Length: 720 a.a.        Molecular weight: 78072.79 Da        Isoelectric Point: 10.0496

>NTDB_id=1099539 ACM67C_RS04535 WP_082790398.1 936369..938531(-) (comA) [Bergeriella denitrificans strain DSM 17675]
MDSAKPPASSALLRYLLPCWIAGVAASFALPFIPPWPLWAGAFVLSAAAALKRPAWLLLPVFLIGAGYGVWRTEAALAAQ
WPLQRAAQTALTVEVADMPHSDGKRVQFTARAQDERGQAFTLQLSDYQLRDWPVGSRWRISAKVRPIIGEVNLRGFNREA
WALANGIDGQDFSDGIALMRALSIGEQSALRSELWQAFRPLGLTHLVSISGLHVTMIALLFGYAARRLLYLLPRTPAKPR
LWVLLTGLSGALVYAGMAGFGVPTQRSVLMLAAFAWAWWRARGQSLWSGWLQALAAVLLLDPLAVLAPGTWLSFGLVAAL
IWGGAGRLKNNARQATLRGQWAASVCSVVLLGYLFAALPLISPLANALAIPWFSWVLAPLALLASALPVAPLQWFAAMLG
EYTLRLLLLLADIAPEWPVAAAPLPLLLAATAAALILLTPRGLGLRPWAWLVLAAFICYRPEKVEPGRLKIMVMDAGQGL
SVWMQTANRSLLFDTATAASAGSAIIPSLHAAGVKRLDALVLSHHDTDHDGGFTAVAAAKKPAAIWAGQPEFYPHARPCS
EQRWQWDGVWFEFLRPPAYTAREDNDQSCVLRVTANGEALLLTGDLGQKGERALLDYYGSRLYSHILVLGHHGSNSASSG
AFLNTVAPLYAVASSGYANAYNHPTPAVRNRVSAHGITLLRTDRSGALLFELGSGNPYQGRLKTYKPYWQKKPFDKDDVP

Nucleotide


Download         Length: 2163 bp        

>NTDB_id=1099539 ACM67C_RS04535 WP_082790398.1 936369..938531(-) (comA) [Bergeriella denitrificans strain DSM 17675]
ATGGACAGCGCCAAACCGCCCGCCTCATCCGCCCTGCTCCGCTATCTGCTGCCCTGCTGGATAGCGGGCGTGGCTGCGTC
TTTCGCGCTCCCTTTCATACCGCCGTGGCCGCTGTGGGCAGGCGCGTTTGTTCTTTCGGCAGCCGCCGCGCTGAAACGCC
CGGCCTGGCTGCTGCTGCCCGTATTTCTTATCGGCGCGGGCTACGGCGTGTGGCGCACCGAGGCGGCGCTGGCCGCGCAA
TGGCCGCTGCAACGCGCCGCGCAAACCGCGCTGACGGTGGAAGTGGCCGACATGCCGCATTCAGACGGCAAGCGCGTGCA
ATTTACCGCGCGGGCGCAGGATGAGCGCGGGCAGGCGTTTACCCTGCAGCTTTCGGATTACCAACTGCGCGACTGGCCGG
TCGGCAGCCGCTGGCGCATTAGTGCCAAAGTCCGCCCCATTATCGGCGAAGTCAATCTGCGCGGCTTCAACCGCGAAGCC
TGGGCCTTAGCCAACGGCATAGACGGGCAGGATTTTTCAGACGGCATCGCGCTGATGCGTGCATTAAGCATAGGCGAACA
ATCCGCCTTACGCAGCGAATTGTGGCAGGCGTTCCGCCCCCTGGGGCTGACCCATTTGGTGAGCATCTCCGGGCTGCACG
TTACCATGATTGCCCTGCTTTTCGGCTATGCCGCCCGCCGCCTGCTGTATCTGCTGCCCCGCACCCCGGCCAAGCCGCGC
CTGTGGGTATTACTCACCGGCCTGAGCGGGGCTTTGGTGTATGCGGGCATGGCCGGTTTCGGCGTACCCACCCAAAGAAG
CGTCTTGATGCTGGCCGCCTTTGCCTGGGCATGGTGGCGCGCACGCGGCCAAAGCCTGTGGTCGGGCTGGCTGCAGGCGC
TGGCCGCCGTATTGCTGCTGGACCCCTTAGCCGTGCTCGCGCCCGGCACCTGGCTCTCTTTCGGGCTGGTGGCCGCGTTG
ATTTGGGGCGGCGCAGGCCGTCTGAAAAACAACGCCCGCCAAGCCACCCTGCGCGGGCAATGGGCGGCTTCCGTCTGCTC
CGTGGTGTTGCTCGGCTACCTGTTTGCCGCGCTGCCGCTCATCAGCCCGCTGGCCAATGCCCTTGCCATACCCTGGTTTT
CCTGGGTGCTTGCCCCGCTCGCGCTGCTGGCTTCCGCGCTGCCCGTTGCGCCGCTGCAATGGTTTGCCGCCATGCTGGGC
GAATACACCCTCAGGCTGCTGCTTCTGCTGGCCGACATCGCCCCCGAATGGCCTGTTGCCGCCGCGCCGCTGCCGCTGCT
GCTGGCCGCCACCGCCGCCGCCTTAATCCTGCTGACCCCGCGCGGCTTGGGGCTGCGGCCGTGGGCATGGCTGGTATTGG
CCGCCTTTATCTGCTACCGCCCGGAAAAAGTCGAGCCGGGCCGTCTGAAAATCATGGTCATGGATGCCGGGCAAGGCTTA
TCGGTCTGGATGCAAACCGCCAACCGCAGCCTGCTTTTCGATACCGCTACCGCCGCATCCGCCGGCAGCGCCATCATTCC
CAGCCTGCACGCCGCAGGCGTCAAACGCTTGGACGCGCTCGTACTCTCCCACCACGATACCGACCACGACGGCGGTTTTA
CCGCTGTCGCCGCAGCCAAAAAACCCGCTGCCATCTGGGCCGGTCAGCCCGAGTTTTACCCGCACGCACGCCCCTGCAGC
GAGCAACGCTGGCAATGGGACGGCGTATGGTTTGAATTTCTGCGCCCGCCCGCCTATACCGCACGCGAAGACAACGACCA
AAGCTGCGTACTGCGCGTAACCGCCAACGGAGAAGCCCTGCTGCTCACCGGCGACTTAGGGCAGAAAGGCGAGCGCGCGC
TGCTGGATTACTACGGCAGCCGCCTGTACAGCCATATCTTGGTATTGGGGCATCACGGCAGCAACAGCGCATCATCAGGC
GCATTTCTCAACACCGTCGCCCCGCTCTACGCCGTCGCCTCCAGCGGCTACGCCAACGCCTACAACCACCCCACCCCCGC
CGTACGCAACCGCGTCAGCGCCCACGGCATCACCCTGCTGCGTACCGACCGATCCGGCGCCCTGCTTTTTGAACTCGGCA
GCGGCAACCCCTACCAAGGGCGGTTAAAAACATACAAGCCTTACTGGCAGAAAAAGCCTTTTGATAAGGATGATGTGCCT
TAG

Domains

Predicted by InterproScan.

Domain of unknown function (DUF4131) (DUF4131)

(35-170)

Competence protein (Competence)

(182-438)

Metallo-beta-lactamase superfamily (Lactamase_B)

(476-650)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Neisseria gonorrhoeae MS11

63.243

100

0.65

Multiple sequence alignment