Detailed information    

insolico Bioinformatically predicted

Overview

Name   recC   Type   Machinery gene
Locus tag   ACM67D_RS07250 Genome accession   NZ_CP181245
Coordinates   1390252..1393458 (-) Length   1068 a.a.
NCBI ID   WP_139595844.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain LNP 16626     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1385252..1398458
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACM67D_RS07230 (ACM67D_07230) mtrC 1385856..1387094 (-) 1239 WP_416192795.1 multidrug efflux RND transporter periplasmic adaptor subunit MtrC -
  ACM67D_RS07235 (ACM67D_07235) mtrR 1387345..1387977 (+) 633 WP_003697360.1 multidrug efflux system transcriptional repressor MtrR -
  ACM67D_RS07240 (ACM67D_07240) - 1388070..1388282 (-) 213 WP_010358853.1 hypothetical protein -
  ACM67D_RS07245 (ACM67D_07245) mtrF 1388614..1390182 (+) 1569 WP_003702953.1 AbgT family antimetabolite efflux transporter MtrF -
  ACM67D_RS07250 (ACM67D_07250) recC 1390252..1393458 (-) 3207 WP_139595844.1 exodeoxyribonuclease V subunit gamma Machinery gene
  ACM67D_RS07255 (ACM67D_07255) - 1393559..1394968 (-) 1410 WP_050164147.1 PepSY-associated TM helix domain-containing protein -
  ACM67D_RS07260 (ACM67D_07260) ccoP 1395170..1396489 (-) 1320 WP_003693749.1 cytochrome-c oxidase, cbb3-type subunit III -
  ACM67D_RS07265 (ACM67D_07265) - 1396513..1396683 (-) 171 WP_003693747.1 CcoQ/FixQ family Cbb3-type cytochrome c oxidase assembly chaperone -
  ACM67D_RS07270 (ACM67D_07270) ccoO 1396688..1397299 (-) 612 WP_002212596.1 cytochrome-c oxidase, cbb3-type subunit II -

Sequence

Protein


Download         Length: 1068 a.a.        Molecular weight: 120134.69 Da        Isoelectric Point: 4.8352

>NTDB_id=1099504 ACM67D_RS07250 WP_139595844.1 1390252..1393458(-) (recC) [Neisseria gonorrhoeae strain LNP 16626]
MFYLYQSNRLESLAALFARIQKVKPLKCALQPEQIVVQSQGMRRYLNTCLARDLGVAANLAFSLPAGLTWKLMKKLIPGI
PELSPFAPEVMRWRLLDLFRSAEFQNGAEFEDVRNVLQDYLGSGESADYQLAGQLADIFDQYLVYRPQWIDAWQQGRILG
LGDDEIWQSKLWRYLDDGRQSAPHRVALWEKLLAALDKDKLPERYFVFGISTMAPMYLQLLHKLSEHCDVFVFALNPSGM
HWGNVIEAAQILKGGGDPDLTQAGHPLLASLGKQGRDFFDFLNEMEIEEETPVFEEGGRDTLLHALQTDIQNLKMPSENV
GSVNTGDGSIRIVSAHSPLRELQILKDKLLKILHEHPDWQPHDIAVLTPNIEPYTPFIEAVFGQAQPGAQALPYSVSDVK
ISRRQPFFYALECVSDLLESRFEVGKVLALLETAPVLRRFGLTGDDLPLLHDMVADLNVRWGLDGEMRGGTDQLFTWKQA
VERMILGWMLPEGGNPMWQDVSAWYADVNQTAMFGRFAAFLETLSDIARIWRQPATVGEWVARCRDLLETLFQAGPDDQK
AVQNLENEWVKWQEESTLAGFFGQLPQQTVIRHIRRFLDSESEAGFLRGGITFCSMVPMRSLPFKVICLLGLNDGDFPRN
TKAAVFDLVAKHPAKGDRARRDDDRYLFLEALISAREILYLSYIGRDIRKDEELASSSLLGELIDTVAAMTGTNSRQLAQ
NWIEQHPLQAFSRRYFQEGGRSDGIFGTRTDYAAALGQTPEPPQPFFDQPVENAEPVAEIGQDEFIRFWRNPVKVWLQQL
AWSEPHIGEAWEPAEPFEPQHAEQIAETYIGARREGQDFSQTAARIAAESLLPSGELGKLWQQSFQTAAKQIDTAVLNSP
KLPPFPYAIPSDGQILTGSLSNLYQCGQVFYAYGKPNAPQRIAFLLEHLIFCAVMPSEAETRQTFIVKSGETEVLAEIAQ
DRALQLLSEWMAFFNIGQNRPLPFFAKTSLAAAEAFAQKQDWEAALKKARTAYYGSKVSKGQKDYTEVALVFGNASQNPL
EQPLFENLARLLADTLAAAEKREGTGAA

Nucleotide


Download         Length: 3207 bp        

>NTDB_id=1099504 ACM67D_RS07250 WP_139595844.1 1390252..1393458(-) (recC) [Neisseria gonorrhoeae strain LNP 16626]
ATGTTTTACCTGTACCAATCCAACCGCCTCGAATCGCTCGCTGCACTGTTTGCCCGCATTCAAAAAGTCAAACCGCTGAA
ATGTGCCTTGCAGCCCGAACAGATTGTTGTGCAGAGTCAGGGGATGCGCCGCTACCTCAACACCTGCCTCGCCCGCGATT
TGGGCGTGGCGGCGAATTTGGCGTTCAGCCTGCCCGCCGGCCTGACGTGGAAGTTGATGAAAAAACTGATTCCCGGTATT
CCGGAACTCAGCCCGTTTGCACCCGAAGTCATGCGCTGGCGGCTGCTGGATTTGTTCCGCAGCGCAGAATTTCAAAACGG
AGCGGAATTTGAAGATGTGAGGAATGTGCTGCAAGACTATCTGGGCAGCGGAGAATCGGCGGATTACCAGCTTGCGGGAC
AGCTTGCAGACATATTCGACCAATACCTCGTGTACCGTCCTCAGTGGATAGACGCTTGGCAGCAGGGCAGGATACTCGGT
TTGGGCGACGACGAAATCTGGCAGTCCAAACTGTGGCGTTACCTTGACGACGGCAGGCAGAGCGCGCCGCACCGTGTCGC
GTTGTGGGAAAAACTGCTTGCCGCGTTGGACAAGGATAAGCTGCCCGAGCGTTATTTCGTGTTCGGCATTTCCACGATGG
CGCCGATGTATTTGCAGCTTTTGCACAAGCTGTCCGAACATTGCGACGTGTTCGTGTTCGCACTCAATCCGAGCGGGATG
CATTGGGGCAACGTCATCGAAGCGGCGCAAATCCTCAAAGGCGGCGGCGATCCCGATCTGACGCAGGCAGGGCATCCGCT
GCTTGCCTCATTGGGCAAGCAGGGGCGCGACTTTTTCGACTTTTTGAACGAAATGGAAATAGAAGAAGAAACGCCGGTAT
TTGAAGAAGGCGGGCGCGATACGCTTTTGCACGCCCTGCAAACCGATATTCAAAACCTGAAAATGCCGTCTGAAAATGTG
GGAAGCGTCAACACGGGCGACGGCTCGATACGCATCGTCTCCGCACACAGCCCTTTGCGCGAATTGCAGATACTCAAAGA
CAAGCTGTTGAAAATTCTGCATGAACATCCCGATTGGCAGCCGCATGATATCGCCGTATTAACCCCGAATATCGAACCCT
ATACGCCTTTTATCGAAGCCGTGTTCGGACAGGCGCAACCCGGCGCGCAGGCATTGCCGTATTCCGTTTCGGACGTGAAA
ATCAGCCGCCGGCAACCGTTTTTTTATGCGTTGGAGTGCGTGTCCGACTTGCTGGAAAGCCGTTTTGAAGTCGGCAAAGT
GCTCGCGCTTTTGGAAACCGCGCCCGTGTTGCGCCGTTTCGGACTGACCGGGGACGATTTACCGCTTTTGCACGACATGG
TTGCCGATTTGAACGTCCGCTGGGGTTTGGACGGAGAAATGCGCGGCGGCACGGATCAGCTGTTTACCTGGAAGCAGGCG
GTAGAACGCATGATATTGGGCTGGATGCTGCCCGAAGGCGGCAACCCGATGTGGCAGGATGTCAGCGCGTGGTATGCCGA
CGTGAATCAAACCGCCATGTTCGGACGTTTTGCCGCCTTCCTCGAAACCCTGTCGGATATTGCCCGGATATGGCGGCAAC
CTGCGACGGTCGGCGAATGGGTGGCGCGTTGCCGGGATTTGCTTGAAACATTGTTTCAAGCCGGGCCCGATGACCAAAAG
GCAGTCCAAAACCTCGAAAACGAATGGGTCAAATGGCAGGAAGAGAGCACTTTGGCTGGGTTTTTCGGACAGTTGCCGCA
ACAAACCGTCATCCGCCATATCCGACGTTTCCTCGACAGCGAAAGCGAGGCAGGCTTTTTACGCGGCGGCATCACCTTTT
GCAGTATGGTGCCGATGCGGAGCCTGCCCTTTAAAGTCATCTGCCTGTTGGGTTTGAACGACGGAGATTTTCCCCGCAAT
ACCAAAGCCGCCGTATTCGACCTGGTTGCCAAACATCCCGCCAAAGGCGACCGCGCCCGCCGCGACGACGACCGCTACCT
CTTCCTCGAAGCCCTCATCAGCGCGCGCGAAATCCTGTATTTGTCCTACATCGGGCGCGACATCCGCAAAGACGAAGAAC
TGGCTTCGTCTTCCCTGTTGGGCGAACTCATCGATACCGTTGCCGCCATGACCGGCACAAACAGCCGCCAACTTGCACAA
AATTGGATAGAACAGCATCCGCTGCAAGCCTTCTCGCGCCGATATTTCCAAGAAGGCGGACGTTCAGACGGCATATTCGG
CACGCGTACCGACTACGCCGCCGCGCTCGGACAAACGCCCGAACCGCCGCAACCCTTTTTCGACCAACCCGTAGAAAACG
CCGAACCTGTTGCCGAAATCGGACAGGACGAATTTATCCGCTTCTGGCGCAACCCCGTCAAAGTATGGCTGCAGCAGCTT
GCGTGGAGCGAACCCCATATCGGCGAAGCCTGGGAGCCTGCCGAACCCTTCGAGCCGCAACACGCGGAGCAAATCGCCGA
AACCTATATCGGGGCGCGCCGCGAAGGACAAGATTTTTCCCAAACCGCCGCCCGTATCGCGGCGGAAAGCCTGCTGCCTT
CCGGAGAATTGGGAAAACTTTGGCAGCAGTCCTTCCAAACCGCCGCCAAACAAATCGACACGGCGGTTTTAAACAGCCCA
AAACTTCCTCCGTTCCCATACGCCATACCGTCGGACGGGCAAATCCTGACCGGCAGTTTGAGCAATTTATACCAATGCGG
ACAAGTGTTTTATGCCTACGGCAAACCCAACGCGCCGCAACGTATCGCTTTTTTGTTGGAACACCTGATATTTTGCGCCG
TTATGCCGTCTGAAGCCGAAACGCGGCAAACCTTTATCGTCAAATCCGGAGAAACAGAAGTATTGGCGGAAATCGCGCAA
GACAGGGCATTGCAGCTGTTGTCGGAATGGATGGCGTTTTTCAATATCGGGCAAAACCGCCCGCTGCCGTTTTTTGCCAA
AACCTCGCTTGCCGCCGCCGAAGCGTTTGCCCAAAAACAAGATTGGGAAGCCGCCCTGAAAAAAGCCCGAACCGCCTATT
ACGGCAGCAAAGTCAGCAAAGGGCAGAAAGACTATACCGAAGTCGCCCTCGTGTTCGGCAACGCAAGCCAAAACCCGCTC
GAACAGCCCCTGTTTGAAAACCTCGCCCGCCTGCTCGCCGACACGCTTGCCGCAGCGGAAAAGAGGGAAGGGACCGGAGC
AGCATAA

Domains

Predicted by InterproScan.

Exodeoxyribonuclease V, gamma subunit (Exonuc_V_gamma)

(2-312)

RecC C-terminal domain (RecC_C)

(778-996)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recC Neisseria gonorrhoeae strain FA1090

98.876

100

0.989

Multiple sequence alignment