Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   ACM67D_RS02345 Genome accession   NZ_CP181245
Coordinates   448217..448882 (+) Length   221 a.a.
NCBI ID   WP_139595905.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain LNP 16626     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 443217..453882
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACM67D_RS02320 (ACM67D_02320) cysT 443343..444179 (-) 837 WP_050154304.1 sulfate ABC transporter permease subunit CysT -
  ACM67D_RS02325 (ACM67D_02325) - 444360..444692 (+) 333 WP_003687908.1 hypothetical protein -
  ACM67D_RS02330 (ACM67D_02330) - 445019..445528 (+) 510 WP_003687909.1 isoprenylcysteine carboxyl methyltransferase family protein -
  ACM67D_RS02335 (ACM67D_02335) - 445758..446339 (-) 582 WP_003701053.1 superoxide dismutase -
  ACM67D_RS02340 (ACM67D_02340) dnaB 446503..447909 (+) 1407 WP_139595906.1 replicative DNA helicase -
  ACM67D_RS02345 (ACM67D_02345) pilH 448217..448882 (+) 666 WP_139595905.1 GspH/FimT family pseudopilin Machinery gene
  ACM67D_RS02350 (ACM67D_02350) pilI 448914..449522 (+) 609 WP_139595904.1 type IV pilus modification protein PilV Machinery gene
  ACM67D_RS02355 (ACM67D_02355) pilJ 449519..450460 (+) 942 WP_139595903.1 PilW family protein Machinery gene
  ACM67D_RS02360 (ACM67D_02360) pilK 450439..451047 (+) 609 WP_139595902.1 pilus assembly PilX family protein Machinery gene
  ACM67D_RS02365 (ACM67D_02365) pilL 451049..451522 (+) 474 WP_176549393.1 PilX family type IV pilin Machinery gene
  ACM67D_RS02370 (ACM67D_02370) - 451592..451900 (-) 309 WP_047920338.1 AzlD family protein -
  ACM67D_RS02375 (ACM67D_02375) - 451897..452605 (-) 709 Protein_463 AzlC family ABC transporter permease -
  ACM67D_RS02380 (ACM67D_02380) dut 452771..453223 (+) 453 WP_047925987.1 dUTP diphosphatase -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 24714.12 Da        Isoelectric Point: 8.3365

>NTDB_id=1099488 ACM67D_RS02345 WP_139595905.1 448217..448882(+) (pilH) [Neisseria gonorrhoeae strain LNP 16626]
MCTRKQQGFTLTELLIVMAIAAIMATIALPNMSGWIASRRIASHAEQVANLLRFSRGEAVRLNLPVYICPAQVKKDGTVD
NQCDFGKKEQGMLAFGDKNDNKVYDGDTADVFLRNVVLNDDIKDKRINYAFNHIAFGSSQPTADRVVWTFNQNGTFGYTT
DQHLTERSSFFYSDGYIQIVLTDAKAVSVDEKKFRSAVVLIDSSGRVEVCRKNDTRAVCKH

Nucleotide


Download         Length: 666 bp        

>NTDB_id=1099488 ACM67D_RS02345 WP_139595905.1 448217..448882(+) (pilH) [Neisseria gonorrhoeae strain LNP 16626]
ATGTGTACACGAAAACAACAAGGTTTCACGCTAACAGAGCTGCTCATCGTGATGGCCATCGCAGCCATTATGGCGACGAT
AGCCCTCCCCAATATGAGTGGGTGGATTGCATCACGCCGCATTGCCAGTCACGCGGAGCAGGTTGCCAACCTTTTGCGTT
TCTCCAGGGGCGAAGCCGTCCGGCTCAATCTCCCTGTCTATATCTGTCCTGCCCAAGTTAAAAAAGACGGTACGGTCGAC
AACCAATGCGACTTCGGTAAGAAGGAACAGGGGATGTTGGCTTTCGGCGACAAAAACGACAATAAGGTATATGACGGTGA
TACTGCGGATGTTTTTCTCCGTAACGTGGTATTGAATGATGATATCAAGGATAAGCGGATTAATTATGCCTTCAACCATA
TCGCTTTCGGTTCGTCTCAGCCGACCGCCGACCGTGTAGTTTGGACGTTCAATCAAAACGGGACGTTCGGTTATACGACA
GACCAGCATCTTACAGAGCGATCCAGCTTTTTTTATTCCGACGGTTATATCCAAATCGTGTTGACAGATGCGAAGGCGGT
TTCTGTCGATGAAAAAAAATTCCGTTCGGCGGTGGTTTTGATTGACAGCAGCGGCAGGGTCGAAGTTTGTCGTAAAAACG
ATACGCGCGCCGTATGCAAACATTAA

Domains

Predicted by InterproScan.

Type II transport protein GspH (GspH)

(44-205)

Prokaryotic N-terminal methylation motif (N_methyl)

(4-29)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Neisseria gonorrhoeae MS11

86.425

100

0.864

Multiple sequence alignment