Detailed information    

insolico Bioinformatically predicted

Overview

Name   recB   Type   Machinery gene
Locus tag   ACM67D_RS01915 Genome accession   NZ_CP181245
Coordinates   362574..366176 (-) Length   1200 a.a.
NCBI ID   WP_047922162.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain LNP 16626     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 357574..371176
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACM67D_RS01895 (ACM67D_01895) - 358452..359576 (-) 1125 WP_003687777.1 DNA cytosine methyltransferase -
  ACM67D_RS01900 (ACM67D_01900) radA 359918..361297 (+) 1380 WP_003690821.1 DNA repair protein RadA Machinery gene
  ACM67D_RS01905 (ACM67D_01905) - 361572..362051 (-) 480 WP_003692767.1 DUF302 domain-containing protein -
  ACM67D_RS01910 (ACM67D_01910) - 362176..362535 (-) 360 WP_003687781.1 rhodanese-like domain-containing protein -
  ACM67D_RS01915 (ACM67D_01915) recB 362574..366176 (-) 3603 WP_047922162.1 exodeoxyribonuclease V subunit beta Machinery gene
  ACM67D_RS01920 (ACM67D_01920) - 366253..367161 (-) 909 WP_025456032.1 Dyp-type peroxidase -
  ACM67D_RS01925 (ACM67D_01925) - 367446..368273 (+) 828 WP_003690826.1 amino acid ABC transporter substrate-binding protein -
  ACM67D_RS01930 (ACM67D_01930) - 368263..368979 (+) 717 WP_003687787.1 amino acid ABC transporter permease -
  ACM67D_RS01935 (ACM67D_01935) - 368989..369744 (+) 756 WP_057321579.1 amino acid ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 1200 a.a.        Molecular weight: 134235.74 Da        Isoelectric Point: 5.5627

>NTDB_id=1099487 ACM67D_RS01915 WP_047922162.1 362574..366176(-) (recB) [Neisseria gonorrhoeae strain LNP 16626]
MSAPIRAFDPLTAPISGTNLIEASAGTGKTYGIAALFTRLIVLEQKSVERVLVVTFTKAATADLKTRLRARLDDVLQVLE
SKEIAELGDDTLSDGIAAYCAEHHEGDTFLPALLEQALQKESRTRLIVRLKAAIGQFDNAAIYTIHGFCQRILRDYAFLC
QAPFDVELTEEDGDRLLVPAQDFWRERVSGDPVLAALAFKRKAVPQTVLAQIRAYLSRPYLNFRRPQADLKQAQRDAETS
WQTVCRLLPELEAGFWRIHPDLNGNSYRKNSFGNLFKELAQKSAAGQLPCLDKDTHERLLKLSSDKLEAGLKKGKTPDAA
VFAELQKLADFGRDLNALEEAEEATMIRLQLDLIEYLNSSLAEMKKSRRERGFDDLLLDVHTALTDNPHAETLARAVAEN
WEIALIDEFQDTDPLQYEIFQKIFIARNRPLFLVGDPKQAIYSFRGADIYAYLQAAEDARHRYTLATNYRSHAALIDSIG
ALFRLKERPFVLENIGYSEVGAARAESRLSPKRPAVQLRWLHENDNEKANKDVLRRRAADYCADEIARALNEASGGRLNF
KGRPLQSGDIAVLVRTHNEAVMISAALKKRQVQSVLLSRESVFASPEAAALSALIGFWLEPRRAGTLRFVLTSGIFGYDA
QQLHDFNQNESEILHWAESARTALDIWQKYGIFAAMQQFSQTHGIETRLLSRNNGRSLTNYFQLLELLAAEDAQNRNPAA
LHKWLRDQISLAGNNGGDNRAIRLESDEDLVKIVTMHASKGLQYPLVYCPFAWDAQDTGPSDWQILHQGANRAELLAKAQ
LSESEQKQYADEEMAERLRLLYVALTRAEEQLNIYAAYSSDTADNPLAYLIEGLPQDSRETVRRTYACEKDGITMLKRNW
RRVADNAPAGTDFAFTEDAPPPAAYRGNADQAAEFAANSIPERGFRFVRHTSFTALSRQTQTPDGGEEDACPSLDAAETS
VPAMPSETPTASDGISIHDFPKGTQAGLCLHEILEDFKFGQAAAEQETLIADKLKKYGFEEIWLPAVAEMAEACRKTPLT
GAYGLSDIPPGCRRPEMGFTLHTEDFGLKRLRDWFARDDIRLPEVCRAAAETIDFHTVNGFLNGFIDMVCQDPDGNICII
DYKSNHLSAYTRQAMDEAVAHQHYYLQALIYAVAAARYFKLRGQPPAAVSVRYLFLRGLDGKGGGVWRWDIDAAALEQIK

Nucleotide


Download         Length: 3603 bp        

>NTDB_id=1099487 ACM67D_RS01915 WP_047922162.1 362574..366176(-) (recB) [Neisseria gonorrhoeae strain LNP 16626]
ATGTCCGCACCCATCCGAGCATTCGACCCGCTGACCGCCCCCATTTCCGGCACCAACCTGATTGAGGCCTCTGCCGGCAC
CGGCAAAACCTACGGCATTGCCGCCCTGTTTACGCGCCTGATCGTATTGGAACAAAAAAGCGTCGAGCGCGTATTGGTCG
TTACCTTCACCAAAGCCGCCACTGCCGATCTGAAAACACGCCTGCGCGCGCGTTTGGACGATGTGTTGCAGGTTTTGGAA
AGCAAAGAAATTGCCGAACTTGGAGACGACACGCTTTCAGACGGCATTGCCGCCTACTGCGCCGAACACCACGAAGGCGA
CACCTTCCTGCCCGCACTCTTGGAACAGGCTTTGCAAAAAGAAAGCCGGACGCGTCTGATTGTCCGCCTCAAGGCCGCCA
TCGGGCAATTCGACAACGCCGCCATCTACACCATCCACGGCTTCTGCCAGCGCATCCTGCGCGACTACGCCTTCCTGTGC
CAAGCACCGTTCGATGTCGAACTGACCGAAGAAGACGGCGACCGCCTGCTTGTCCCGGCTCAAGATTTTTGGCGGGAACG
CGTCAGCGGCGACCCGGTGCTTGCCGCATTGGCGTTTAAACGCAAAGCTGTGCCGCAAACCGTCCTTGCCCAAATCCGCG
CCTACCTGTCCCGCCCGTACCTGAATTTCCGCCGTCCGCAGGCGGATTTGAAACAGGCGCAGCGCGACGCCGAAACCTCA
TGGCAAACCGTCTGCCGCCTGCTGCCCGAGCTGGAAGCCGGCTTTTGGCGCATCCATCCCGACCTCAACGGCAACAGTTA
CCGCAAAAACAGCTTCGGCAACCTTTTTAAAGAACTGGCACAAAAATCCGCCGCCGGACAACTGCCCTGTCTGGACAAAG
ACACGCACGAACGGCTCTTGAAACTCTCATCCGACAAACTCGAAGCCGGACTGAAAAAAGGCAAAACGCCCGATGCGGCA
GTATTTGCCGAATTGCAGAAACTGGCAGACTTCGGGCGCGATTTGAACGCACTCGAAGAAGCGGAAGAAGCAACAATGAT
CCGGCTGCAACTGGATTTAATCGAATATCTCAACAGCAGCCTTGCCGAAATGAAAAAATCGCGCCGCGAACGCGGTTTCG
ACGACCTGCTGCTCGATGTCCACACCGCGCTGACCGACAATCCGCACGCCGAAACCCTCGCCCGCGCCGTTGCCGAAAAC
TGGGAAATCGCGCTGATCGACGAGTTCCAAGACACCGACCCGCTGCAATACGAAATCTTCCAAAAGATTTTCATCGCCCG
AAACCGCCCGCTGTTCCTCGTCGGCGACCCCAAACAGGCGATTTACAGCTTTCGCGGTGCGGACATTTACGCCTACCTTC
AGGCGGCGGAAGACGCGCGGCACCGCTACACGCTCGCCACCAACTACCGCAGCCACGCCGCGCTTATCGACAGCATCGGC
GCGCTGTTCCGCCTCAAAGAACGCCCGTTCGTTTTGGAAAACATCGGCTATTCGGAAGTCGGTGCGGCGCGTGCCGAAAG
CAGGTTGTCGCCCAAACGTCCTGCCGTACAGCTCCGTTGGCTGCACGAAAACGACAATGAAAAAGCCAACAAAGACGTTT
TGCGCCGCCGTGCCGCCGACTATTGCGCCGACGAAATCGCCCGCGCGCTCAACGAAGCCTCCGGAGGCCGTCTGAATTTC
AAAGGCCGCCCGTTGCAGTCGGGCGATATTGCCGTTCTGGTACGCACGCACAACGAGGCGGTGATGATTTCCGCCGCACT
GAAAAAACGGCAGGTGCAAAGCGTCCTGCTTTCGCGCGAATCCGTGTTCGCCTCGCCCGAAGCCGCCGCCCTGTCCGCGC
TCATCGGCTTCTGGCTCGAACCGCGCCGCGCCGGAACGCTGCGCTTTGTCCTGACAAGCGGCATATTCGGTTATGACGCG
CAGCAATTGCACGACTTCAACCAAAACGAAAGCGAGATTTTGCATTGGGCGGAATCTGCCCGAACCGCGCTCGACATATG
GCAAAAATACGGCATTTTCGCCGCTATGCAGCAGTTTTCCCAAACACACGGCATCGAAACGCGCCTCTTAAGCCGGAACA
ACGGGCGCAGCCTGACCAATTATTTCCAACTGCTCGAACTGCTTGCCGCCGAAGACGCGCAAAACCGCAACCCCGCCGCA
CTGCACAAATGGCTGCGCGATCAAATCAGCCTGGCCGGCAACAACGGCGGCGACAACCGCGCCATCCGTTTGGAAAGCGA
CGAAGATTTGGTCAAAATCGTTACCATGCACGCCTCGAAAGGTTTGCAGTATCCGCTGGTGTACTGCCCGTTTGCGTGGG
ACGCGCAAGATACCGGACCGTCCGACTGGCAAATCCTCCACCAAGGCGCAAACCGGGCCGAACTTTTGGCAAAGGCGCAA
CTGTCGGAAAGCGAACAGAAGCAATACGCCGACGAAGAAATGGCGGAACGCCTGCGCCTGCTTTATGTCGCGCTGACGCG
TGCCGAGGAACAGCTCAACATCTACGCCGCCTATTCTTCCGATACCGCCGACAACCCCCTTGCCTACCTGATCGAAGGCT
TGCCGCAAGACAGCCGCGAAACCGTCCGCCGTACCTATGCGTGTGAAAAAGACGGCATAACGATGCTCAAACGCAACTGG
CGGCGCGTGGCGGACAATGCCCCGGCCGGCACGGATTTCGCCTTCACAGAAGATGCGCCGCCCCCTGCCGCCTATCGCGG
CAACGCCGATCAAGCCGCCGAATTTGCCGCAAACAGCATTCCCGAACGCGGATTCCGATTTGTCCGCCACACCAGCTTCA
CCGCCTTAAGCCGCCAAACCCAAACGCCCGACGGCGGCGAAGAAGATGCCTGCCCGTCCTTGGATGCCGCCGAAACCTCG
GTGCCGGCGATGCCGTCTGAAACGCCGACGGCTTCAGACGGCATATCGATACACGACTTTCCGAAAGGCACGCAGGCGGG
GCTGTGCCTGCACGAAATTCTTGAAGATTTCAAATTCGGACAAGCAGCCGCCGAACAGGAAACCCTCATTGCCGACAAGC
TGAAAAAATACGGTTTTGAAGAAATATGGCTGCCCGCCGTTGCCGAAATGGCGGAAGCCTGCCGCAAAACGCCGCTGACT
GGGGCATACGGCCTGTCCGACATCCCGCCCGGGTGCCGCCGTCCCGAAATGGGCTTTACCCTCCACACCGAAGACTTCGG
CCTCAAACGGCTGCGCGACTGGTTTGCCCGCGACGACATCAGGCTGCCCGAAGTCTGCCGTGCCGCCGCCGAGACGATCG
ACTTCCACACCGTCAACGGCTTTTTAAACGGCTTTATCGATATGGTCTGCCAAGACCCCGACGGCAATATCTGCATCATC
GACTACAAATCCAACCACCTATCCGCCTACACACGGCAGGCGATGGACGAAGCCGTCGCGCACCAGCACTATTACCTTCA
GGCACTGATTTACGCCGTTGCCGCCGCGCGCTACTTCAAACTGCGCGGACAACCGCCCGCCGCCGTTTCCGTCCGCTACC
TGTTTTTGCGCGGATTGGATGGCAAAGGCGGCGGCGTTTGGCGTTGGGACATAGATGCCGCCGCTTTGGAACAGATAAAA
TAA

Domains

Predicted by InterproScan.

PD-(D/E)XK nuclease superfamily (PDDEXK_1)

(1069-1178)

UvrD/REP helicase N-terminal domain (UvrD-helicase)

(15-458)

UvrD-like helicase C-terminal domain (UvrD_C)

(745-835)

UvrD-like helicase C-terminal domain (UvrD_C)

(463-651)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recB Neisseria gonorrhoeae strain FA1090

99.25

100

0.993

Multiple sequence alignment