Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG   Type   Machinery gene
Locus tag   ACM67E_RS09565 Genome accession   NZ_CP181244
Coordinates   2080596..2082635 (-) Length   679 a.a.
NCBI ID   WP_416191217.1    Uniprot ID   -
Organism   Neisseria sp. CCUG12390     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2075596..2087635
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACM67E_RS09540 (ACM67E_09540) - 2075711..2076214 (-) 504 WP_416191214.1 GNAT family N-acetyltransferase -
  ACM67E_RS09545 (ACM67E_09545) - 2076360..2076896 (-) 537 WP_416191215.1 isochorismatase family protein -
  ACM67E_RS09550 (ACM67E_09550) - 2077027..2077620 (-) 594 WP_416191216.1 hypothetical protein -
  ACM67E_RS09555 (ACM67E_09555) - 2078059..2078865 (+) 807 WP_416190995.1 integrase core domain-containing protein -
  ACM67E_RS09560 (ACM67E_09560) msrAB 2078954..2080492 (-) 1539 WP_416192771.1 bifunctional peptide-methionine (S)-S-oxide reductase MsrA/peptide-methionine (R)-S-oxide reductase MsrB -
  ACM67E_RS09565 (ACM67E_09565) recG 2080596..2082635 (-) 2040 WP_416191217.1 ATP-dependent DNA helicase RecG Machinery gene
  ACM67E_RS09570 (ACM67E_09570) rng 2082978..2084471 (-) 1494 WP_416191218.1 ribonuclease G -
  ACM67E_RS09575 (ACM67E_09575) grxC 2084738..2084995 (+) 258 WP_416191219.1 glutaredoxin 3 -
  ACM67E_RS09580 (ACM67E_09580) secB 2085015..2085449 (+) 435 WP_416191220.1 protein-export chaperone SecB -
  ACM67E_RS09585 (ACM67E_09585) - 2085632..2086198 (-) 567 WP_416191221.1 tetratricopeptide repeat protein -
  ACM67E_RS09590 (ACM67E_09590) hisC 2086416..2087492 (+) 1077 WP_416191222.1 histidinol-phosphate transaminase -

Sequence

Protein


Download         Length: 679 a.a.        Molecular weight: 74957.64 Da        Isoelectric Point: 7.4138

>NTDB_id=1099468 ACM67E_RS09565 WP_416191217.1 2080596..2082635(-) (recG) [Neisseria sp. CCUG12390]
MLPVHQKQLKITETSAKKLEKLNLNTPWDVVLHLPLRYEDETHIMPIADAPVGVPCQVEGTVTHQEVTFKPRKQLVVQIA
DGSGSVLHLRFIHFYASHQKQMAVGKRIRAVGEIKHGFHGDEMIHPKIRDADHTGLAESLTPVYPTVNGLNQPTLRRIVQ
TALDTVPLHDTLPDELLGRLNLPHLAESLRLLHSPPPSFTIHQLSDGTLPAWQRLKFDELLAQQLSMRLARQKRVNGNAN
PLIGNGKLSGKLLNALPFALTAAQQRVLAEIRTDMAQTHPMHRLLQGDVGSGKTIVAALAALTAVEAGCQVAVMAPTEIL
AEQHYTKFKQWFESLGLAVAWLSGSQRKKEKETNKAAISDGLAPIAVGTHALFQDDVAFQNLGLVIVDEQHRFGVAQRLA
LKNKGSDVHQLMMSATPIPRTLAMSFFADLDVSVIDELPPNRTPIKTRLVNSLRRAEVEGFVLNTCRKGQQAYWVCPLIE
ESETLQLQTAVDTLAELQTALPELSIGLVHGRMKPSEKAEVMAEFAAGRLNVLVATTVIEVGVDVPNASLMVIEHAERMG
LAQLHQLRGRVGRGAAASACVLLFSEPLSELAKARLKVIYEHTDGFEIARQDLNIRGPGEFLGARQSGVPMLRFANLEED
LQLLEKAREIAPKLIEERPDIVEKHLDRWLSSREGYLGV

Nucleotide


Download         Length: 2040 bp        

>NTDB_id=1099468 ACM67E_RS09565 WP_416191217.1 2080596..2082635(-) (recG) [Neisseria sp. CCUG12390]
ATGCTGCCCGTTCACCAAAAACAGCTCAAAATCACCGAAACTTCCGCGAAAAAGCTGGAAAAGCTCAATCTCAACACGCC
GTGGGACGTGGTTTTGCACCTGCCTTTGCGCTACGAAGACGAAACCCACATCATGCCGATTGCCGATGCGCCCGTCGGCG
TGCCGTGTCAGGTGGAGGGAACCGTTACCCATCAGGAAGTAACGTTCAAACCGCGCAAGCAGTTGGTGGTGCAGATTGCC
GACGGTTCGGGCAGCGTGCTGCACCTGCGCTTTATCCATTTCTACGCCAGTCATCAGAAGCAGATGGCGGTGGGCAAACG
CATCCGCGCGGTGGGCGAAATCAAGCACGGTTTTCACGGCGACGAGATGATCCACCCGAAAATCCGCGATGCGGACCACA
CCGGTTTGGCCGAAAGCCTCACGCCCGTTTACCCGACCGTGAACGGCCTGAACCAGCCGACTTTGCGCCGCATCGTTCAG
ACGGCCTTGGATACCGTGCCGCTGCACGATACGCTGCCCGACGAATTGTTAGGCCGTCTGAACCTGCCGCATCTAGCCGA
AAGCCTGCGCCTGCTGCATTCGCCGCCGCCCAGTTTCACCATCCACCAGCTCTCAGACGGCACGCTCCCTGCGTGGCAGC
GGCTGAAATTCGACGAACTTTTGGCGCAGCAGCTTTCCATGCGGCTGGCGCGGCAGAAGCGTGTGAACGGCAATGCCAAC
CCATTGATCGGTAACGGAAAACTGTCCGGAAAATTATTGAACGCGCTGCCGTTTGCGCTCACGGCGGCGCAGCAGCGCGT
GCTTGCCGAAATCCGCACCGACATGGCGCAAACCCACCCCATGCACCGCCTGCTGCAAGGCGATGTCGGCAGCGGCAAAA
CCATCGTCGCCGCGCTTGCCGCGCTCACCGCCGTCGAAGCAGGCTGCCAAGTGGCGGTGATGGCGCCCACCGAAATTCTG
GCCGAGCAGCATTACACCAAGTTCAAACAATGGTTCGAGTCGCTCGGCCTGGCCGTGGCGTGGCTTTCCGGCAGCCAGCG
CAAAAAAGAAAAAGAAACCAACAAAGCCGCGATTTCAGACGGCCTCGCGCCGATTGCCGTCGGTACGCACGCGCTGTTTC
AAGACGACGTCGCGTTCCAAAACCTCGGCCTCGTGATTGTCGACGAGCAGCACCGTTTCGGCGTGGCGCAGCGGCTCGCC
CTGAAAAACAAAGGCAGCGACGTGCACCAGCTCATGATGTCGGCCACCCCCATTCCGCGCACGCTGGCGATGAGTTTTTT
CGCCGACCTCGACGTTTCCGTCATCGACGAACTGCCGCCCAACCGCACACCCATCAAAACCCGCCTCGTCAACAGCCTGC
GCCGCGCCGAAGTGGAAGGCTTCGTGCTGAACACCTGCCGCAAAGGGCAGCAGGCCTACTGGGTGTGTCCGCTGATTGAA
GAAAGCGAAACCCTGCAACTGCAAACCGCCGTCGATACCCTCGCCGAACTTCAGACGGCCTTGCCCGAACTCAGCATCGG
CCTGGTTCACGGCCGCATGAAGCCGTCTGAAAAAGCCGAAGTCATGGCCGAATTTGCCGCAGGCCGTCTGAATGTGCTGG
TCGCCACCACCGTTATCGAAGTCGGCGTGGACGTACCCAACGCCAGCCTGATGGTCATCGAACACGCCGAACGCATGGGC
TTGGCGCAACTGCACCAACTGCGCGGCCGCGTCGGACGCGGAGCCGCCGCCAGCGCGTGCGTATTACTGTTTTCCGAACC
CCTGAGCGAACTGGCCAAAGCCCGTCTGAAAGTGATTTACGAACACACCGACGGCTTTGAAATCGCCCGCCAAGACCTCA
ACATCCGCGGCCCCGGCGAATTTCTCGGCGCACGGCAAAGCGGCGTACCCATGCTGCGCTTCGCCAATCTCGAAGAAGAC
CTGCAGCTGCTGGAAAAAGCCCGCGAAATCGCGCCCAAGCTGATTGAAGAGCGGCCGGATATTGTGGAGAAACATTTGGA
CAGGTGGCTGAGCAGCAGGGAAGGGTATTTGGGGGTGTGA

Domains

Predicted by InterproScan.

Helicase conserved C-terminal domain (Helicase_C)

(467-574)

RecG wedge domain (RecG_wedge)

(11-165)

DEAD/DEAH box helicase (DEAD)

(263-418)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(603-663)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG Neisseria meningitidis strain C311

83.947

100

0.839

Multiple sequence alignment