Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   ACM67E_RS07290 Genome accession   NZ_CP181244
Coordinates   1553010..1555235 (-) Length   741 a.a.
NCBI ID   WP_416190805.1    Uniprot ID   -
Organism   Neisseria sp. CCUG12390     
Function   DNA processing; DNA transport into the cytoplasm (predicted from homology)   
DNA processing DNA binding and uptake

Genomic Context

Location: 1548010..1560235
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACM67E_RS07275 (ACM67E_07275) - 1549606..1550085 (-) 480 WP_416190802.1 FKBP-type peptidyl-prolyl cis-trans isomerase -
  ACM67E_RS07280 (ACM67E_07280) - 1550649..1550957 (+) 309 WP_416190803.1 hypothetical protein -
  ACM67E_RS07285 (ACM67E_07285) - 1551161..1552531 (+) 1371 WP_416190804.1 FAD-binding oxidoreductase -
  ACM67E_RS07290 (ACM67E_07290) comA 1553010..1555235 (-) 2226 WP_416190805.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  ACM67E_RS07295 (ACM67E_07295) - 1555462..1556406 (-) 945 WP_416190806.1 bile acid:sodium symporter family protein -
  ACM67E_RS07300 (ACM67E_07300) - 1556632..1557546 (-) 915 WP_416190807.1 NAD(P)H-hydrate dehydratase -
  ACM67E_RS07305 (ACM67E_07305) - 1557647..1558306 (+) 660 WP_416190808.1 cytochrome b/b6 domain-containing protein -
  ACM67E_RS07310 (ACM67E_07310) tadA 1558496..1559218 (-) 723 WP_416190809.1 tRNA adenosine(34) deaminase TadA -
  ACM67E_RS07315 (ACM67E_07315) miaA 1559220..1560170 (-) 951 WP_416190810.1 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA -

Sequence

Protein


Download         Length: 741 a.a.        Molecular weight: 80976.89 Da        Isoelectric Point: 9.5791

>NTDB_id=1099462 ACM67E_RS07290 WP_416190805.1 1553010..1555235(-) (comA) [Neisseria sp. CCUG12390]
MLRYGLPCWVFGVLVSFALPAVPPLWAWLSAAGILLAAAWRWKPLMAVLCVLAGTAYGVWRTESALARQWPLAQTGSAAL
TVEVDDLPRRDERRVQFAARAWDKGGREYRLMLSDYQLRDWPVGSRWRVSARVRPAVGEVNLRGLNREAWALANGVDGMG
SLGKGRVPLEGAGRLNMTVWRERISRNWQQTNLYGHDFSDGIALMCALGIGEQSALRTELWQAFRPLGLTHLVSISGLHV
TMVAVWCGFLVKLLLRTLSFVPKRPKLWVLAGGVLGALLYAGLAGFGVPTQRSVLMLAAFAYAWWRGGGLSPWTGWWQAL
AAVLLFDPSAALGVGLWLSFGLVAALIGSSAGRLKERGWRLAWRGQWAATLLSVVLLGYLFASLPLLSPLVNLVAIPWFS
WVLTPLALLGSALPFAPLQWPAAALGEYTLRLLVRLADFSPEFAVAAAPWPLVVLAMVAAWLILLPRGTGLKAWAWLVLA
GFVFYRLQPLPEGRLKVWVWDAGQGLSVLMQTRNHNLLFDTGTAQAAGAGIVPSLSALGVRRLDKLVLSHHDTDHDGGYP
AVSHLRPSEILAGQPEFYLQAEFCRESQWEWDGVQFELLRPSEKYSEDDNEQSCVLRAVAGGQAFLVTGDMGQKGELDLA
EKYGDALYSQVLVLGHHGSNTASAGAFLNAVSPEYAVASSGYANSYGHPTAAVRNKVAAHGAELLRTDLSGALVFELGGG
GEVFQGRLKRDKFYWQKKPFD

Nucleotide


Download         Length: 2226 bp        

>NTDB_id=1099462 ACM67E_RS07290 WP_416190805.1 1553010..1555235(-) (comA) [Neisseria sp. CCUG12390]
ATGTTGCGTTACGGGTTGCCGTGTTGGGTATTCGGGGTTTTGGTTTCGTTTGCTCTGCCTGCCGTACCGCCTTTGTGGGC
GTGGCTGTCGGCGGCAGGGATTTTGTTGGCGGCGGCTTGGCGGTGGAAGCCGTTGATGGCGGTGTTGTGCGTATTGGCCG
GCACGGCTTACGGCGTATGGCGGACGGAATCCGCCTTGGCGCGGCAATGGCCTTTGGCGCAAACGGGCAGCGCGGCTTTA
ACGGTCGAGGTGGACGATCTGCCGCGCCGCGACGAGCGTCGGGTACAGTTTGCGGCACGGGCTTGGGACAAGGGCGGCAG
GGAATACCGGCTGATGCTGTCGGATTACCAATTGCGCGATTGGCCGGTGGGCAGCCGCTGGCGGGTGTCGGCGCGGGTGC
GGCCGGCGGTGGGCGAAGTGAATCTGCGCGGGCTGAACCGCGAAGCATGGGCGTTGGCCAACGGTGTGGACGGCATGGGT
TCGCTGGGAAAGGGCAGGGTGCCGCTGGAGGGGGCAGGCCGTCTGAATATGACGGTCTGGCGCGAACGCATCAGCCGCAA
TTGGCAGCAGACAAATCTTTACGGCCATGATTTTTCAGACGGCATCGCTTTGATGTGCGCTTTGGGCATCGGCGAACAGT
CGGCCTTGCGCACCGAATTGTGGCAGGCGTTCCGGCCTTTGGGGCTGACGCATCTGGTGAGCATTTCGGGATTGCATGTA
ACGATGGTGGCGGTGTGGTGCGGTTTTTTGGTGAAACTGCTGCTGCGCACCCTGTCTTTCGTACCGAAGCGGCCGAAGCT
GTGGGTGTTGGCCGGCGGCGTGCTGGGTGCCTTGCTGTATGCGGGCTTGGCCGGATTCGGCGTGCCGACGCAGCGCAGCG
TATTGATGTTGGCCGCCTTTGCGTATGCGTGGTGGCGCGGCGGCGGCTTGTCGCCGTGGACGGGCTGGTGGCAGGCGTTG
GCGGCGGTGTTGCTGTTTGATCCGTCGGCGGCACTGGGTGTGGGCTTGTGGCTGTCGTTCGGTTTGGTGGCGGCGTTAAT
CGGGTCGTCGGCAGGCCGTCTGAAGGAGCGCGGCTGGCGGCTGGCTTGGCGCGGACAATGGGCGGCGACGCTGCTGTCGG
TGGTGTTGCTGGGTTATCTTTTCGCGTCGCTGCCGCTGTTGAGTCCGCTGGTGAATCTGGTGGCGATTCCTTGGTTTTCT
TGGGTGCTGACACCGCTGGCGCTGCTCGGTTCCGCCTTGCCGTTCGCACCGCTGCAATGGCCGGCGGCGGCTTTGGGCGA
ATACACGCTGCGTCTATTGGTGCGGCTGGCGGACTTTTCGCCTGAATTTGCGGTGGCCGCCGCACCGTGGCCGTTGGTTG
TTTTGGCGATGGTGGCGGCATGGCTGATTCTGCTGCCGCGCGGTACGGGGCTGAAGGCGTGGGCTTGGCTGGTGTTGGCC
GGGTTTGTGTTTTACCGTTTGCAGCCCTTGCCGGAAGGCCGTCTGAAAGTGTGGGTGTGGGACGCGGGGCAGGGGCTGTC
GGTGTTGATGCAGACGCGCAATCACAATCTTCTTTTCGATACCGGCACGGCGCAGGCGGCGGGAGCGGGCATTGTGCCGA
GTTTGAGTGCCCTAGGTGTGAGGCGGCTGGACAAGCTGGTTTTGTCGCACCACGATACCGATCACGACGGCGGCTATCCG
GCGGTCAGCCATTTGAGGCCGTCTGAAATTCTGGCCGGGCAGCCGGAATTTTATCTCCAAGCCGAATTTTGCCGCGAATC
GCAATGGGAGTGGGATGGGGTGCAGTTTGAATTGTTGAGGCCGTCTGAAAAATATTCGGAAGACGATAACGAGCAAAGCT
GCGTGCTGCGCGCGGTCGCAGGCGGTCAGGCTTTCTTGGTGACGGGAGACATGGGGCAGAAAGGCGAACTGGATTTGGCG
GAAAAATACGGGGATGCGCTTTACAGCCAGGTCTTGGTTTTGGGGCATCACGGCAGCAATACCGCCAGCGCAGGTGCGTT
TCTGAATGCGGTGTCGCCCGAGTATGCAGTGGCCTCAAGCGGCTATGCCAACAGCTACGGCCACCCGACGGCAGCGGTGC
GGAACAAAGTGGCAGCTCACGGAGCAGAGCTGCTGCGCACGGATTTGTCGGGTGCGCTGGTGTTTGAATTGGGCGGTGGC
GGAGAAGTGTTTCAAGGCCGTCTGAAACGGGACAAGTTTTATTGGCAGAAAAAGCCGTTTGATTGA

Domains

Predicted by InterproScan.

Competence protein (Competence)

(209-465)

Metallo-beta-lactamase superfamily (Lactamase_B)

(501-679)

Domain of unknown function (DUF4131) (DUF4131)

(24-161)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Neisseria gonorrhoeae MS11

67.476

100

0.675

Multiple sequence alignment