Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD   Type   Machinery gene
Locus tag   ACM67E_RS05530 Genome accession   NZ_CP181244
Coordinates   1176971..1178710 (+) Length   579 a.a.
NCBI ID   WP_416192611.1    Uniprot ID   -
Organism   Neisseria sp. CCUG12390     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1171971..1183710
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACM67E_RS05505 (ACM67E_05505) - 1172155..1173684 (+) 1530 WP_416192606.1 SurA N-terminal domain-containing protein -
  ACM67E_RS05510 (ACM67E_05510) recR 1173763..1174368 (+) 606 WP_416192607.1 recombination mediator RecR -
  ACM67E_RS05515 (ACM67E_05515) - 1174442..1174729 (-) 288 WP_416192608.1 hypothetical protein -
  ACM67E_RS05520 (ACM67E_05520) - 1174950..1176200 (+) 1251 WP_416192609.1 lipoprotein-releasing ABC transporter permease subunit -
  ACM67E_RS05525 (ACM67E_05525) lolD 1176193..1176876 (+) 684 WP_416192610.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  ACM67E_RS05530 (ACM67E_05530) recD 1176971..1178710 (+) 1740 WP_416192611.1 exodeoxyribonuclease V subunit alpha Machinery gene
  ACM67E_RS05535 (ACM67E_05535) - 1179086..1180222 (+) 1137 WP_416192612.1 hypothetical protein -
  ACM67E_RS05540 (ACM67E_05540) - 1180352..1180753 (-) 402 WP_416192613.1 RNA-binding S4 domain-containing protein -
  ACM67E_RS05545 (ACM67E_05545) - 1180966..1181925 (+) 960 WP_416192614.1 acetyl-CoA carboxylase carboxyltransferase subunit alpha -
  ACM67E_RS05550 (ACM67E_05550) tilS 1182011..1183339 (+) 1329 WP_416192615.1 tRNA lysidine(34) synthetase TilS -

Sequence

Protein


Download         Length: 579 a.a.        Molecular weight: 63727.94 Da        Isoelectric Point: 6.8884

>NTDB_id=1099455 ACM67E_RS05530 WP_416192611.1 1176971..1178710(+) (recD) [Neisseria sp. CCUG12390]
MNALGDLNQAAALAAIQFLKQHTPAEAALVAPYVEDLFNALQSGHSFIRVSDEEAATLKRAPSVVGFDGQKPLVLNGRRL
FLGRLWQLEHDLAVEIKRLATATVADVDWLQAAQNLQNWFPEAGSEGQRDAAGLALLQAFMLITGGPGTGKTTTVAKLLG
LICDNAATLPRIALAAPTGKAAAHMARSLHRALDGFDLPERIRQHLLMLEGQTVHRLLKLRPPQMHPAFHAQQPLPLDVL
VVDEASMLDTSLLLQLLKAVPSGCRVIFLGDEFQLPSVGVGAVLAALSRQTVLDEDTDRRLNQYLPQHKFAVAENPPALS
QNIAHLHVSHRFGADSGIGCLARAVVSGQSETAWAQFERFPDELQVLHADMKRQAELLYRKHQKYWQAVDGGNIALVFGH
AADVAVLTAWRQDADAFNQAYFLHLQRQRRISGDTPWFAGQMIMVTRNDYALDVFNGDIGLIMPDTESANGLAAYFPFSD
GFRKIPISRLPAFETAFAMTVHKSQGSEYREVWLLPPTVEAANQSDDVLNSLNNALLYTAITRACERFTFLGDKKTFERA
VKTQKKRQTALADMLNSLF

Nucleotide


Download         Length: 1740 bp        

>NTDB_id=1099455 ACM67E_RS05530 WP_416192611.1 1176971..1178710(+) (recD) [Neisseria sp. CCUG12390]
ATGAATGCCCTTGGAGATTTGAACCAAGCAGCGGCTCTGGCTGCGATACAATTCCTGAAACAACACACACCGGCAGAGGC
GGCCTTGGTTGCTCCTTACGTCGAGGACTTGTTCAATGCCCTACAAAGCGGACACTCGTTTATCCGGGTCAGTGATGAAG
AAGCGGCAACGCTGAAACGTGCGCCTTCAGTGGTTGGGTTTGACGGTCAAAAACCATTGGTATTGAACGGACGACGTTTG
TTTTTAGGCAGATTATGGCAGCTCGAACATGATTTGGCCGTCGAAATCAAACGGCTGGCAACCGCAACGGTGGCTGATGT
CGATTGGTTGCAGGCGGCTCAAAATCTGCAAAACTGGTTTCCCGAAGCGGGTAGCGAAGGGCAGCGTGATGCGGCCGGAT
TGGCATTATTGCAGGCCTTTATGCTGATTACCGGCGGACCGGGCACGGGTAAAACGACTACGGTCGCCAAGTTGTTGGGG
CTGATTTGCGATAACGCCGCAACCTTACCCCGCATCGCCTTGGCCGCCCCGACCGGAAAAGCGGCGGCACATATGGCACG
CTCGCTGCATCGTGCCTTAGACGGCTTTGATCTGCCCGAACGCATCAGGCAGCATTTGCTGATGCTGGAGGGGCAGACCG
TGCACCGTTTGTTGAAACTGCGCCCGCCGCAAATGCATCCGGCGTTCCATGCGCAGCAGCCTCTGCCTTTAGATGTGTTG
GTGGTGGACGAGGCGTCCATGCTGGATACATCGCTGCTGCTGCAACTGCTTAAGGCTGTTCCGAGCGGTTGCCGCGTGAT
ATTTTTGGGTGACGAGTTCCAATTGCCTTCCGTCGGCGTCGGTGCGGTATTGGCGGCATTGTCGAGGCAGACGGTTTTGG
ATGAGGATACCGACCGCCGTTTGAACCAGTATCTGCCGCAGCATAAGTTTGCCGTTGCTGAAAATCCGCCCGCATTGTCA
CAAAACATTGCGCATTTGCATGTCAGCCACCGTTTCGGCGCCGACAGCGGTATCGGCTGCTTGGCGCGGGCGGTGGTGTC
CGGCCAAAGCGAAACGGCATGGGCGCAGTTTGAGCGTTTTCCGGACGAATTGCAGGTGTTGCATGCCGATATGAAACGCC
AAGCCGAACTTTTATATCGCAAGCATCAAAAATACTGGCAGGCGGTGGACGGCGGCAATATTGCGCTGGTTTTCGGCCAT
GCGGCTGATGTGGCGGTATTAACGGCATGGCGGCAGGATGCCGATGCGTTCAATCAGGCTTATTTCCTTCATTTGCAGCG
GCAGCGGCGCATATCCGGCGATACGCCTTGGTTTGCCGGACAAATGATTATGGTGACACGCAATGACTATGCACTGGATG
TCTTCAACGGCGACATCGGCCTGATCATGCCGGATACCGAATCAGCCAACGGTTTGGCGGCGTATTTTCCGTTTTCAGAC
GGCTTCAGGAAAATCCCCATCAGCCGGCTGCCCGCGTTTGAAACGGCTTTTGCCATGACGGTTCATAAAAGCCAGGGTTC
GGAATATCGGGAAGTCTGGCTTCTGCCGCCGACTGTGGAAGCAGCAAACCAAAGCGATGATGTGCTGAACAGCTTGAATA
ATGCGCTGCTGTACACCGCCATTACCCGTGCATGTGAGCGTTTTACCTTTTTAGGGGATAAAAAGACCTTTGAAAGAGCG
GTGAAAACCCAGAAAAAACGGCAGACGGCACTGGCCGATATGCTTAATTCGCTGTTTTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_30)

(125-294)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(496-544)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD Neisseria gonorrhoeae strain FA1090

61.702

97.409

0.601

Multiple sequence alignment