Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   ACL22V_RS19775 Genome accession   NZ_CP181209
Coordinates   4184406..4185605 (-) Length   399 a.a.
NCBI ID   WP_033455490.1    Uniprot ID   -
Organism   Bordetella bronchiseptica strain KM24     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4179406..4190605
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACL22V_RS19755 (ACL22V_003965) phnC 4180047..4180817 (+) 771 WP_003808589.1 phosphonate ABC transporter ATP-binding protein -
  ACL22V_RS19760 (ACL22V_003966) phnE 4180835..4181704 (+) 870 WP_172452875.1 phosphonate ABC transporter, permease protein PhnE -
  ACL22V_RS19765 (ACL22V_003967) phnE 4181701..4182522 (+) 822 WP_003808584.1 phosphonate ABC transporter, permease protein PhnE -
  ACL22V_RS19770 (ACL22V_003968) - 4182761..4184359 (+) 1599 WP_003808580.1 CYTH and CHAD domain-containing protein -
  ACL22V_RS19775 (ACL22V_003969) pilA 4184406..4185605 (-) 1200 WP_033455490.1 signal recognition particle-docking protein FtsY Machinery gene
  ACL22V_RS19780 (ACL22V_003970) rsmD 4185681..4186301 (+) 621 WP_003808577.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  ACL22V_RS19785 (ACL22V_003971) coaD 4186322..4186831 (+) 510 WP_003808574.1 pantetheine-phosphate adenylyltransferase -
  ACL22V_RS19790 (ACL22V_003972) - 4186886..4187137 (+) 252 WP_003808570.1 YfhL family 4Fe-4S dicluster ferredoxin -
  ACL22V_RS19795 (ACL22V_003973) - 4187134..4188351 (+) 1218 WP_003808568.1 benzoate/H(+) symporter BenE family transporter -
  ACL22V_RS19800 (ACL22V_003974) - 4188359..4188745 (-) 387 WP_003808567.1 MOSC N-terminal beta barrel domain-containing protein -

Sequence

Protein


Download         Length: 399 a.a.        Molecular weight: 41665.64 Da        Isoelectric Point: 5.5094

>NTDB_id=1099434 ACL22V_RS19775 WP_033455490.1 4184406..4185605(-) (pilA) [Bordetella bronchiseptica strain KM24]
MFSFFKKKSPPPAAPAQPAPPPEAVDAGSAAPAQPQPAEPQPAPMPAPQPEPQPEPQPQQPPEPAPPAMASPPVAEPQPS
VAEPQPPVAAAPEAPRKASWLSRLKQGLSRTGQNIGGLFVGVKVDENLFEELESALIMADAGIEATEKLLAALRARVKKE
RIDDPAQVKTALRQLLADHLRPLERSFDLGRAQPLVVMIAGVNGAGKTTSIGKLAHTFQRQGASVLLAAGDTFRAAAREQ
LVEWGSRNNVTVISQDGGDPAAVAFDSVNAGRARNVGVVMVDTAGRLPTQLHLMEELKKIRRVIGKAEASAPHEVLLVVD
GNTGQNALAQIRAFDAAITLTGLVVTKLDGTAKGGTLAAVAAGSQGVRPIPVYWIGVGEGLEDLQPFVADEFAAALLAD

Nucleotide


Download         Length: 1200 bp        

>NTDB_id=1099434 ACL22V_RS19775 WP_033455490.1 4184406..4185605(-) (pilA) [Bordetella bronchiseptica strain KM24]
ATGTTCAGCTTCTTCAAGAAAAAATCCCCTCCGCCCGCCGCGCCGGCCCAGCCCGCGCCGCCGCCGGAGGCAGTGGACGC
AGGGTCAGCCGCACCTGCGCAGCCTCAACCCGCCGAGCCGCAACCGGCCCCGATGCCGGCCCCCCAGCCCGAGCCGCAGC
CCGAGCCGCAGCCGCAACAACCGCCCGAGCCGGCGCCGCCGGCCATGGCGTCGCCGCCTGTCGCCGAGCCGCAGCCATCT
GTCGCCGAGCCGCAGCCACCGGTCGCGGCCGCGCCCGAGGCGCCCCGCAAGGCCTCGTGGCTGAGCCGGCTCAAACAGGG
CCTGTCGCGCACCGGCCAGAACATCGGCGGGCTGTTCGTCGGCGTGAAGGTCGACGAGAACCTGTTCGAGGAACTGGAGT
CGGCGCTGATCATGGCCGACGCGGGCATCGAGGCCACCGAGAAACTGCTGGCCGCGCTGCGCGCGCGCGTCAAGAAAGAG
CGCATCGACGATCCGGCGCAGGTCAAGACGGCGCTGCGCCAATTGCTGGCCGACCATCTGCGGCCGCTGGAGCGGTCCTT
CGACCTGGGGCGGGCCCAGCCCCTGGTGGTCATGATTGCCGGCGTCAACGGCGCGGGCAAGACGACCTCGATCGGCAAGC
TGGCGCATACCTTCCAGCGCCAGGGCGCCAGCGTGCTGCTGGCGGCCGGGGACACCTTCCGCGCGGCGGCGCGCGAGCAA
TTGGTCGAATGGGGCAGCCGCAACAATGTGACCGTGATCTCGCAGGATGGCGGCGATCCGGCCGCGGTGGCGTTCGACTC
GGTCAATGCCGGACGTGCGCGCAACGTGGGCGTGGTGATGGTGGATACGGCCGGCCGCCTGCCCACGCAGCTGCACCTGA
TGGAAGAATTGAAGAAGATCCGCCGCGTCATCGGCAAGGCCGAGGCCAGCGCGCCGCATGAAGTGCTGCTGGTGGTCGAT
GGCAACACCGGCCAGAACGCGCTGGCGCAAATCCGCGCCTTCGACGCCGCCATCACCCTCACCGGCCTGGTCGTCACCAA
GCTGGACGGCACCGCCAAGGGCGGCACGCTGGCGGCCGTGGCCGCCGGCAGCCAGGGCGTGCGGCCCATCCCGGTCTATT
GGATCGGCGTGGGCGAGGGGTTGGAGGACCTGCAGCCCTTCGTGGCCGACGAGTTCGCCGCCGCCCTGCTGGCCGACTGA

Domains

Predicted by InterproScan.

SRP54-type protein, helical bundle domain (SRP54_N)

(115-174)

SRP54-type protein, GTPase domain (SRP54)

(195-397)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

48.7

100

0.516

Multiple sequence alignment