Detailed information    

insolico Bioinformatically predicted

Overview

Name   tsaP   Type   Machinery gene
Locus tag   ACM660_RS00915 Genome accession   NZ_CP181170
Coordinates   185756..186907 (-) Length   383 a.a.
NCBI ID   WP_004802007.1    Uniprot ID   R9AM74
Organism   Acinetobacter sp. SEK541     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 180756..191907
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACM660_RS00895 (ACM660_00895) - 181935..182588 (+) 654 WP_412781861.1 TetR/AcrR family transcriptional regulator -
  ACM660_RS00900 (ACM660_00900) - 182691..183611 (+) 921 WP_026057520.1 DMT family transporter -
  ACM660_RS00905 (ACM660_00905) - 184006..184575 (-) 570 WP_005200688.1 L-threonylcarbamoyladenylate synthase -
  ACM660_RS00910 (ACM660_00910) dprA 184612..185745 (-) 1134 WP_005200687.1 DNA-processing protein DprA Machinery gene
  ACM660_RS00915 (ACM660_00915) tsaP 185756..186907 (-) 1152 WP_004802007.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  ACM660_RS00920 (ACM660_00920) def 187030..187560 (+) 531 WP_004802009.1 peptide deformylase -
  ACM660_RS00925 (ACM660_00925) - 187581..188018 (+) 438 WP_004656476.1 DUF2946 family protein -
  ACM660_RS00930 (ACM660_00930) - 188093..190204 (+) 2112 WP_026057519.1 TonB-dependent copper receptor -
  ACM660_RS00935 (ACM660_00935) - 190249..191010 (-) 762 WP_005200683.1 hypothetical protein -

Sequence

Protein


Download         Length: 383 a.a.        Molecular weight: 41866.00 Da        Isoelectric Point: 9.4198

>NTDB_id=1099369 ACM660_RS00915 WP_004802007.1 185756..186907(-) (tsaP) [Acinetobacter sp. SEK541]
MKKVLNGIHSFHALGLKKQLIAAAICAGLGMSINFAHAASPNVSPPSVKVGAPHVYVVKKGDTLWDISGKFLSKPWRWPE
IWASNKHVKNPHWIYPGDRLLLCSLNGKPLIGKDEGDGCDGIIRRYTGNTSNLRPQVRVEALNNSVPVIPLAHIQQWLER
TSVLPADAIANTPYILGTADNRVLAGKGQSVYVRGKGLENGQRYGVFREGEPYIVLDQNGKKQNLGVELTQVASAVAIRN
ENDITTVELTDSYNGEVRRGDRVMAEQDAMLPTLFYPIDANQVKDGGKIIRVMGSIGTAAKNGVVTVDRGTADGVEIGQV
FSVYQDGEVVRDPKTKEKVKLPGQYLGSAMIFKSFDRISYAYILESELPIKLGSDIKPPRLDD

Nucleotide


Download         Length: 1152 bp        

>NTDB_id=1099369 ACM660_RS00915 WP_004802007.1 185756..186907(-) (tsaP) [Acinetobacter sp. SEK541]
ATGAAAAAGGTTTTAAACGGCATACACTCATTTCATGCCTTGGGGTTAAAAAAACAACTGATTGCCGCTGCAATTTGTGC
GGGATTAGGCATGAGCATTAATTTCGCCCACGCAGCCAGCCCAAATGTCAGTCCACCTTCAGTGAAAGTCGGTGCGCCAC
ATGTTTATGTGGTGAAAAAAGGCGATACGCTTTGGGATATCTCAGGGAAATTTTTAAGTAAGCCTTGGCGCTGGCCAGAG
ATATGGGCAAGCAATAAACATGTGAAAAACCCGCACTGGATTTATCCAGGCGATCGCTTGCTGCTGTGCAGTTTGAACGG
TAAACCATTGATTGGTAAAGATGAGGGCGATGGCTGTGACGGTATCATTCGTCGCTATACAGGCAATACCTCAAATTTAC
GTCCTCAAGTCCGTGTTGAGGCCTTGAATAATAGTGTTCCTGTTATTCCTTTGGCACACATTCAGCAATGGTTAGAGCGT
ACCTCGGTCCTGCCAGCAGATGCGATTGCCAATACCCCTTATATCTTGGGCACAGCAGACAACCGCGTACTTGCAGGTAA
AGGTCAAAGTGTTTATGTGCGTGGTAAAGGCCTTGAAAACGGTCAACGTTATGGCGTATTCCGTGAAGGTGAGCCGTACA
TTGTATTGGACCAAAATGGCAAGAAACAGAATCTTGGGGTTGAGCTGACGCAAGTGGCTTCGGCTGTTGCCATTCGCAAT
GAAAATGACATCACTACAGTTGAACTCACCGATAGTTATAACGGTGAAGTTCGTCGTGGCGATCGGGTGATGGCTGAACA
GGATGCTATGCTACCAACCTTATTCTACCCAATTGATGCCAATCAGGTAAAAGACGGCGGCAAAATCATTCGTGTGATGG
GATCTATTGGTACAGCAGCCAAAAATGGCGTGGTCACCGTTGATCGTGGCACCGCTGATGGCGTTGAAATTGGTCAAGTA
TTCAGTGTCTATCAAGATGGTGAAGTGGTCAGAGATCCAAAAACCAAAGAGAAAGTGAAACTCCCTGGACAATACCTAGG
TAGCGCCATGATCTTTAAGAGTTTTGATCGTATCAGCTACGCCTATATCCTTGAAAGCGAGTTACCGATCAAGCTTGGCT
CGGATATTAAGCCACCTCGTTTAGATGACTAA

Domains

Predicted by InterproScan.

LysM domain (LysM)

(56-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB R9AM74

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tsaP Acinetobacter baumannii D1279779

71.094

100

0.713

Multiple sequence alignment