Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   ACM6AC_RS07680 Genome accession   NZ_CP181150
Coordinates   1592617..1593063 (-) Length   148 a.a.
NCBI ID   WP_228587449.1    Uniprot ID   -
Organism   Staphylococcus aureus strain AG21-0600     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1587617..1598063
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACM6AC_RS07650 (ACM6AC_07650) gcvPA 1588543..1589889 (-) 1347 WP_000019687.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  ACM6AC_RS07655 (ACM6AC_07655) gcvT 1589909..1591000 (-) 1092 WP_000093355.1 glycine cleavage system aminomethyltransferase GcvT -
  ACM6AC_RS07660 (ACM6AC_07660) - 1591159..1591683 (-) 525 WP_001015122.1 shikimate kinase -
  ACM6AC_RS07665 (ACM6AC_07665) - 1591673..1591819 (-) 147 WP_001789879.1 hypothetical protein -
  ACM6AC_RS07670 (ACM6AC_07670) comGF 1591916..1592413 (-) 498 WP_154284346.1 competence type IV pilus minor pilin ComGF Machinery gene
  ACM6AC_RS07675 (ACM6AC_07675) comGE 1592331..1592630 (-) 300 WP_000844413.1 hypothetical protein Machinery gene
  ACM6AC_RS07680 (ACM6AC_07680) comGD 1592617..1593063 (-) 447 WP_228587449.1 competence type IV pilus minor pilin ComGD Machinery gene
  ACM6AC_RS07685 (ACM6AC_07685) comGC 1593041..1593352 (-) 312 WP_000472256.1 competence type IV pilus major pilin ComGC Machinery gene
  ACM6AC_RS07690 (ACM6AC_07690) comGB 1593366..1594436 (-) 1071 WP_000776403.1 competence type IV pilus assembly protein ComGB Machinery gene
  ACM6AC_RS07695 (ACM6AC_07695) comGA 1594408..1595382 (-) 975 WP_000697215.1 competence type IV pilus ATPase ComGA Machinery gene
  ACM6AC_RS07700 (ACM6AC_07700) - 1595434..1596057 (-) 624 WP_001223006.1 MBL fold metallo-hydrolase -
  ACM6AC_RS07705 (ACM6AC_07705) - 1596054..1596383 (-) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  ACM6AC_RS07710 (ACM6AC_07710) - 1596383..1597369 (-) 987 WP_000161315.1 ROK family glucokinase -
  ACM6AC_RS07715 (ACM6AC_07715) - 1597366..1597569 (-) 204 WP_000087561.1 YqgQ family protein -

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 17127.30 Da        Isoelectric Point: 10.3312

>NTDB_id=1099166 ACM6AC_RS07680 WP_228587449.1 1592617..1593063(-) (comGD) [Staphylococcus aureus strain AG21-0600]
MEKQLQIRKQSAFTMIEILVVMMLISIFLLLTMTSKGLSNLRVIDDEANIISLITELNYIKSQAIANQGYINVRFYENSD
TIKVIENNKIRFLKLKVGKIINVAKVDIIAFDKKGNINKFGSITIENNNSIYRIIFHIEKGRIRYEKL

Nucleotide


Download         Length: 447 bp        

>NTDB_id=1099166 ACM6AC_RS07680 WP_228587449.1 1592617..1593063(-) (comGD) [Staphylococcus aureus strain AG21-0600]
ATGGAGAAGCAGTTGCAAATTAGAAAGCAGTCAGCATTTACTATGATTGAGATACTTGTGGTAATGATGTTAATCAGTAT
ATTTTTACTTTTGACAATGACATCTAAAGGATTAAGCAATCTTAGAGTAATAGATGACGAGGCAAATATCATTTCTCTTA
TTACTGAATTGAATTATATTAAATCGCAAGCTATAGCAAATCAAGGATATATCAATGTTAGATTTTATGAAAACAGTGAC
ACTATTAAAGTAATAGAGAATAATAAAATACGATTTCTAAAATTAAAAGTAGGCAAAATAATTAATGTTGCAAAAGTTGA
TATTATTGCCTTTGATAAAAAAGGGAATATCAATAAATTTGGTAGCATAACAATTGAGAATAACAATTCAATTTATAGAA
TAATATTCCATATTGAAAAAGGAAGAATTCGTTATGAAAAGCTATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(8-31)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Staphylococcus aureus MW2

97.973

100

0.98
  comGD Staphylococcus aureus N315

97.973

100

0.98

Multiple sequence alignment