Detailed information NTG0109910

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: HW01_RS06930
• Genome accession: NZ_CP008866
• Coordinates: 1451537..1452541 (+)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa strain T38079
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1446537..1457541

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HW01_RS06900 (HW01_09250)	fghA	1446629..1447480 (+)	852	WP_003113869.1	S-formylglutathione hydrolase	-
HW01_RS06905 (HW01_09245)	ispF	1447551..1448024 (+)	474	WP_003098560.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
HW01_RS06910 (HW01_09240)	truD	1448021..1449088 (+)	1068	WP_016852567.1	tRNA pseudouridine(13) synthase TruD	-
HW01_RS06915 (HW01_09235)	surE	1449076..1449825 (+)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
HW01_RS06920 (HW01_09230)	-	1449858..1450493 (+)	636	WP_003098558.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
HW01_RS06925 (HW01_09225)	-	1450539..1451432 (+)	894	WP_016852568.1	peptidoglycan DD-metalloendopeptidase family protein	-
HW01_RS06930 (HW01_09220)	rpoS	1451537..1452541 (+)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
HW01_RS06935 (HW01_09215)	fdxA	1452968..1453291 (-)	324	WP_003119354.1	ferredoxin FdxA	-
HW01_RS06940 (HW01_09210)	mutS	1453358..1455925 (-)	2568	WP_003113873.1	DNA mismatch repair protein MutS	-
HW01_RS06950 (HW01_09205)	-	1456051..1457058 (-)	1008	WP_003098486.1	TolB family protein	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=109910 HW01_RS06930 WP_003113871.1 1451537..1452541(+) (rpoS) [Pseudomonas aeruginosa strain T38079]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=109910 HW01_RS06930 WP_003113871.1 1451537..1452541(+) (rpoS) [Pseudomonas aeruginosa strain T38079]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAA
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCCCCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTGGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGACCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGGCACGAAAGCAGCACGCTGG
AAGAGGTCGGCCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATCCTGGAGAAGAATGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653