Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   ABXG87_RS09510 Genome accession   NZ_AP031488
Coordinates   2017990..2018700 (+) Length   236 a.a.
NCBI ID   WP_013991284.1    Uniprot ID   -
Organism   Streptococcus salivarius strain NBRC 13956     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2012990..2023700
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABXG87_RS09500 (Ssa13956_18100) treC 2014174..2015799 (-) 1626 WP_353551583.1 alpha,alpha-phosphotrehalase -
  ABXG87_RS09505 (Ssa13956_18110) treP 2015854..2017803 (-) 1950 WP_231844805.1 PTS system trehalose-specific EIIBC component -
  ABXG87_RS09510 (Ssa13956_18120) treR 2017990..2018700 (+) 711 WP_013991284.1 trehalose operon repressor Regulator
  ABXG87_RS09515 (Ssa13956_18130) - 2018754..2019314 (-) 561 WP_041817289.1 TIGR01440 family protein -
  ABXG87_RS09520 - 2019331..2019669 (-) 339 WP_013991282.1 hypothetical protein -
  ABXG87_RS09525 (Ssa13956_18140) - 2019702..2020058 (-) 357 WP_013991281.1 hypothetical protein -
  ABXG87_RS09530 (Ssa13956_18150) - 2020360..2021241 (-) 882 WP_002887043.1 class II fructose-bisphosphate aldolase -
  ABXG87_RS09540 (Ssa13956_18160) - 2021664..2022959 (-) 1296 WP_002887045.1 hypothetical protein -
  ABXG87_RS09545 (Ssa13956_18170) rplQ 2023210..2023596 (-) 387 WP_002885709.1 50S ribosomal protein L17 -

Sequence

Protein


Download         Length: 236 a.a.        Molecular weight: 27341.92 Da        Isoelectric Point: 6.6088

>NTDB_id=109827 ABXG87_RS09510 WP_013991284.1 2017990..2018700(+) (treR) [Streptococcus salivarius strain NBRC 13956]
MKKYQIIYKDLEKAIHEQKYQVGDFLPTEQELVQSYQVSRDTIRKALTLLVEEGLVKKIHGSGSQVINQEQINFPVSDLT
SYQELIEQQGLNSQTNVISLDKIIVDSNLSERTGFSNSRQVWRVVRQRVVDSCASVIDIDYLDASLVPQLNRSIAEYSIY
DYIENQLNLSISHAFKEITIDNATDQDKILIDLGKDQHVVCVRSKVYLNNGKQFQFTESRHKLEKFKFVDYAKRHH

Nucleotide


Download         Length: 711 bp        

>NTDB_id=109827 ABXG87_RS09510 WP_013991284.1 2017990..2018700(+) (treR) [Streptococcus salivarius strain NBRC 13956]
ATGAAAAAATATCAGATTATTTATAAGGATTTAGAAAAAGCTATCCATGAGCAAAAGTATCAAGTGGGAGACTTTCTCCC
CACCGAGCAAGAACTGGTTCAATCTTACCAGGTTAGTAGAGATACTATACGAAAGGCATTAACCTTACTCGTTGAAGAAG
GCTTGGTCAAAAAAATTCATGGCTCTGGTTCTCAGGTTATTAACCAGGAACAAATCAACTTTCCTGTGTCTGACCTTACT
AGTTACCAGGAGCTAATCGAGCAACAAGGCCTTAATTCGCAAACCAACGTTATTTCTCTGGATAAAATCATTGTTGATTC
AAATCTCTCAGAAAGAACTGGTTTTTCTAATAGCCGACAGGTTTGGCGTGTTGTTCGTCAAAGAGTCGTTGATAGCTGTG
CCTCTGTTATAGATATTGATTACCTAGACGCCAGCCTTGTTCCGCAACTAAACCGTAGCATTGCTGAATACTCTATTTAC
GACTACATTGAGAATCAACTCAACCTTAGCATTTCCCACGCCTTTAAAGAAATCACTATCGATAACGCTACCGATCAAGA
TAAGATTCTTATCGACCTAGGTAAGGACCAGCACGTTGTCTGTGTCCGTTCAAAAGTTTATTTAAATAATGGAAAACAGT
TCCAATTTACGGAAAGTCGCCACAAACTTGAAAAATTCAAATTTGTTGATTATGCCAAGCGTCATCATTGA

Domains

Predicted by InterproScan.

UTRA domain (UTRA)

(88-227)

Bacterial regulatory proteins, gntR family (GntR)

(4-66)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

60.426

99.576

0.602

Multiple sequence alignment