Detailed information    

insolico Bioinformatically predicted

Overview


Name   sepM   Type   Regulator
Locus tag   ABXG87_RS08285 Genome accession   NZ_AP031488
Coordinates   1768216..1769292 (-) Length   358 a.a.
NCBI ID   WP_353551457.1    Uniprot ID   -
Organism   Streptococcus salivarius strain NBRC 13956     
Function   processing of CSP (predicted from homology)   
Competence regulation

Genomic Context


Location: 1763216..1774292
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABXG87_RS08260 (Ssa13956_15700) - 1763360..1764142 (+) 783 WP_045769056.1 ABC transporter ATP-binding protein -
  ABXG87_RS08265 (Ssa13956_15710) - 1764326..1766393 (-) 2068 Protein_1575 sodium:proton antiporter -
  ABXG87_RS08270 (Ssa13956_15730) - 1766402..1766644 (-) 243 WP_014634967.1 hypothetical protein -
  ABXG87_RS08275 (Ssa13956_15740) - 1766641..1767189 (-) 549 WP_221739267.1 class I SAM-dependent methyltransferase -
  ABXG87_RS08280 (Ssa13956_15750) - 1767186..1768130 (-) 945 WP_004183328.1 TIGR01212 family radical SAM protein -
  ABXG87_RS08285 (Ssa13956_15760) sepM 1768216..1769292 (-) 1077 WP_353551457.1 SepM family pheromone-processing serine protease Regulator
  ABXG87_RS08290 (Ssa13956_15770) coaD 1769270..1769767 (-) 498 WP_288628368.1 pantetheine-phosphate adenylyltransferase -
  ABXG87_RS08295 (Ssa13956_15780) rsmD 1769800..1770363 (-) 564 WP_353552068.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  ABXG87_RS08300 (Ssa13956_15790) trxB 1770490..1771443 (-) 954 WP_353552070.1 thioredoxin-disulfide reductase -
  ABXG87_RS08305 (Ssa13956_15800) - 1771476..1771700 (-) 225 WP_353551459.1 DUF4059 family protein -
  ABXG87_RS08310 (Ssa13956_15810) - 1771912..1772655 (-) 744 WP_002891704.1 amino acid ABC transporter ATP-binding protein -
  ABXG87_RS08315 (Ssa13956_15820) - 1772655..1773401 (-) 747 WP_141760020.1 amino acid ABC transporter permease -

Sequence


Protein


Download         Length: 358 a.a.        Molecular weight: 39004.67 Da        Isoelectric Point: 9.2472

>NTDB_id=109813 ABXG87_RS08285 WP_353551457.1 1768216..1769292(-) (sepM) [Streptococcus salivarius strain NBRC 13956]
MANKNESKSLLGKIWRIKWWLLSIFTVLFLLFALFFPLNNYYVELPGGAFDTKEVLTVDKKADDSKGSYNFVAVAQTKAT
LALMLYAQLNDFAKLQTAEEATGNYSDEDFMRINQFYMETSQNQAIYQGLTLAGKEASLEYMGVYVLQVADDSSFKGVLN
VADTVTAVNGKTFDNSTDLIKYVQGLKLGSKVKVTYTTDDKEKTATGKIIKIANGKNGIGIGLTDHTEVKSPENVKFKLD
GVGGPSAGLMFTLAIYDQVSGQDLKAGRKIAGTGTIEKDGSVGDIGGAYLKVKSAADSGADIFFVPNNPVTKEMKKADPD
AKTNYQEAKEAAKKLGTKMKIVPVKTAQEAIDYLKKTK

Nucleotide


Download         Length: 1077 bp        

>NTDB_id=109813 ABXG87_RS08285 WP_353551457.1 1768216..1769292(-) (sepM) [Streptococcus salivarius strain NBRC 13956]
GTGGCAAACAAGAACGAATCTAAATCACTATTGGGGAAAATTTGGCGGATTAAGTGGTGGTTGTTAAGTATTTTTACGGT
ACTTTTCCTCCTATTTGCCCTCTTTTTCCCGCTAAATAATTATTATGTTGAGCTTCCGGGTGGTGCTTTTGACACCAAGG
AAGTCTTGACTGTAGATAAGAAAGCTGATGATTCAAAAGGATCCTACAATTTTGTGGCAGTGGCCCAAACCAAGGCGACT
TTGGCCTTGATGCTCTATGCTCAGCTTAATGATTTTGCAAAGCTTCAAACGGCTGAAGAGGCAACTGGGAATTACTCTGA
TGAAGATTTCATGCGTATCAACCAATTTTACATGGAGACTTCCCAAAACCAAGCGATTTATCAGGGATTGACTCTGGCTG
GTAAGGAGGCTAGCTTGGAGTATATGGGTGTTTATGTGCTTCAGGTGGCTGACGATTCTAGCTTCAAGGGTGTCCTCAAT
GTTGCAGATACAGTGACAGCTGTCAATGGCAAGACTTTTGATAATTCTACTGACTTGATAAAATACGTTCAAGGACTTAA
GCTGGGTTCAAAAGTCAAGGTCACTTATACGACAGATGACAAAGAAAAGACTGCCACTGGTAAGATTATCAAGATTGCCA
ATGGTAAAAATGGTATTGGTATCGGTTTGACAGATCATACTGAGGTCAAGAGTCCTGAAAATGTGAAGTTTAAACTTGAT
GGTGTTGGCGGACCAAGTGCAGGTCTTATGTTTACCCTGGCTATTTACGATCAGGTGTCTGGTCAAGATCTTAAGGCTGG
TCGTAAGATTGCTGGAACAGGAACCATTGAAAAGGATGGTTCGGTCGGTGATATCGGTGGTGCCTACCTCAAGGTGAAAT
CAGCGGCTGATAGTGGTGCAGACATTTTCTTCGTACCTAATAATCCAGTAACCAAGGAAATGAAAAAGGCTGATCCGGAT
GCCAAAACCAACTATCAAGAGGCTAAGGAAGCTGCCAAGAAACTGGGAACCAAGATGAAAATCGTCCCTGTTAAAACAGC
TCAAGAAGCCATTGATTATTTGAAAAAGACTAAATAA

Domains


Predicted by InterproScan.

(142-206)


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sepM Streptococcus mutans UA159

65.103

95.251

0.62


Multiple sequence alignment