Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   ACM2W4_RS09855 Genome accession   NZ_CP181086
Coordinates   2088449..2090266 (-) Length   605 a.a.
NCBI ID   WP_225001030.1    Uniprot ID   -
Organism   Enterococcus casseliflavus strain B6     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 2083449..2095266
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACM2W4_RS09830 (ACM2W4_09830) - 2084406..2085305 (-) 900 WP_225001028.1 RluA family pseudouridine synthase -
  ACM2W4_RS09835 (ACM2W4_09835) - 2085310..2086107 (-) 798 WP_026008090.1 NAD kinase -
  ACM2W4_RS09840 (ACM2W4_09840) - 2086113..2086781 (-) 669 WP_225001029.1 GTP pyrophosphokinase -
  ACM2W4_RS09845 (ACM2W4_09845) - 2086978..2087553 (+) 576 WP_156235818.1 CYTH domain-containing protein -
  ACM2W4_RS09850 (ACM2W4_09850) - 2087662..2088318 (+) 657 WP_074932949.1 ClpXP adapter SpxH family protein -
  ACM2W4_RS09855 (ACM2W4_09855) pepF 2088449..2090266 (-) 1818 WP_225001030.1 oligoendopeptidase F Regulator
  ACM2W4_RS09860 (ACM2W4_09860) - 2090335..2091324 (-) 990 WP_225001031.1 competence protein CoiA -
  ACM2W4_RS09865 (ACM2W4_09865) - 2091425..2092075 (-) 651 WP_005229698.1 adaptor protein MecA -
  ACM2W4_RS09870 (ACM2W4_09870) spxA 2092228..2092626 (-) 399 WP_003127030.1 transcriptional regulator SpxA -
  ACM2W4_RS09875 (ACM2W4_09875) - 2093337..2095073 (-) 1737 WP_225001032.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 605 a.a.        Molecular weight: 69125.69 Da        Isoelectric Point: 4.6724

>NTDB_id=1098087 ACM2W4_RS09855 WP_225001030.1 2088449..2090266(-) (pepF) [Enterococcus casseliflavus strain B6]
MSETKQLPARESIPVEKTWDLTKIYADDAAFDIEFQEIQAQVKEASRYQGTLADGPQAFLSALEFVLDLSRRLEKLYVYS
HLKNDQDTANTTYQGLYAKASSLVAQVSEAVAWFDPELLTMSDETIWGYFDQEPKLAVYRHMIEKTINERPHILPAEQEA
LLAGAGEIFGAPGNIFSVLNNADLDFPVVEDENGEKVQLSHGVYGELMESTDRSVREAAFKGLYGVYEQFRNTFAQTLST
NIKAHNFKAKARKFDSARQAALSANHIPESVYDTLVDVVNQHLPLLHRYMALRKRLLAVDTLHMYDVYTPILGEAPIRYT
YEEAVEKAKEALKPLGEEYLAVVEEAFSNRWIDVVENKGKRSGAYSSGAYDTLPYILMNWNDRLDQLFTLVHEMGHSVHS
YFTRNNQPYAYGDYSIFLAEIASTTNENILTEYMLQTETDPRVKAYVLNHFLDGFKGTIFRQTQFAEFEHFMHVEDAKGT
PLTSEFLSENYAELNAKYYGPSVEKDPEIRLEWSRIPHFYYNYYVYQYSTGFSAASALAKKILAGEPDALTNYLNYLKAG
RSDYPIEVMKKAGVDMTKADYIEDAMKVFEQRLNELEELVKEIEA

Nucleotide


Download         Length: 1818 bp        

>NTDB_id=1098087 ACM2W4_RS09855 WP_225001030.1 2088449..2090266(-) (pepF) [Enterococcus casseliflavus strain B6]
ATGTCAGAAACAAAACAATTACCAGCACGTGAATCGATTCCAGTCGAAAAAACGTGGGACTTAACGAAAATCTATGCCGA
TGATGCGGCTTTTGACATAGAATTTCAAGAAATCCAAGCACAGGTCAAAGAAGCCAGCCGTTACCAAGGAACTTTAGCAG
ACGGTCCGCAAGCCTTCTTATCCGCTTTAGAATTTGTCTTAGATCTTTCTCGCCGTTTGGAGAAGCTGTATGTTTACAGT
CATTTGAAAAACGATCAAGATACCGCTAATACGACTTATCAAGGCTTATATGCGAAAGCCAGCAGTTTAGTTGCGCAAGT
AAGTGAAGCCGTTGCTTGGTTTGATCCCGAGTTATTGACGATGTCCGATGAAACGATTTGGGGCTATTTCGATCAAGAAC
CGAAACTAGCTGTTTATCGTCATATGATCGAAAAAACCATCAACGAGCGTCCACATATCTTGCCAGCGGAGCAAGAAGCG
TTATTAGCCGGTGCTGGCGAAATTTTTGGGGCACCCGGCAACATTTTTTCTGTTTTAAACAATGCTGATTTGGATTTTCC
AGTAGTTGAAGACGAAAACGGGGAAAAAGTACAGTTATCTCATGGTGTATACGGTGAGTTGATGGAAAGCACGGATCGAT
CTGTCCGTGAAGCAGCCTTTAAAGGTCTTTATGGTGTCTATGAGCAATTCCGCAATACCTTTGCCCAAACCTTAAGCACC
AATATCAAAGCTCATAACTTTAAAGCAAAAGCCCGCAAATTTGATTCGGCACGGCAAGCCGCTTTGAGTGCCAACCATAT
TCCTGAAAGTGTCTATGATACCTTAGTGGACGTCGTCAATCAGCACCTGCCATTGTTGCATCGTTATATGGCATTAAGAA
AACGCCTGTTGGCTGTCGATACGTTGCATATGTATGATGTTTATACGCCAATTTTAGGGGAAGCGCCTATTCGTTATACT
TATGAAGAAGCGGTCGAAAAAGCGAAAGAAGCGTTAAAACCATTAGGTGAAGAATACCTTGCAGTGGTTGAAGAAGCCTT
CAGCAATCGGTGGATCGATGTCGTTGAAAACAAAGGCAAACGCAGTGGCGCGTATTCTTCTGGTGCCTATGACACGCTGC
CATATATCCTGATGAACTGGAATGATCGATTGGATCAACTCTTTACTCTTGTTCATGAAATGGGACACAGTGTGCATAGT
TACTTTACACGTAATAACCAGCCTTATGCCTATGGGGATTATTCGATTTTCTTAGCAGAAATCGCTTCGACGACGAACGA
AAATATATTAACGGAATACATGCTTCAGACTGAAACAGATCCACGGGTCAAAGCCTATGTCTTGAATCATTTTCTCGATG
GCTTCAAAGGAACGATTTTCCGTCAAACGCAATTTGCTGAGTTTGAACACTTCATGCACGTGGAAGATGCGAAAGGAACG
CCGTTGACCAGTGAGTTCTTAAGCGAGAACTATGCCGAGTTAAATGCAAAATATTACGGACCTTCTGTTGAAAAAGATCC
TGAGATTCGTCTTGAGTGGTCACGCATTCCGCATTTCTATTACAATTACTATGTTTACCAGTATTCAACTGGATTTTCGG
CAGCTTCTGCTTTAGCGAAGAAAATCTTAGCAGGTGAACCAGATGCCTTAACAAACTATTTGAACTATTTGAAAGCTGGA
CGCAGTGATTATCCAATCGAAGTCATGAAAAAAGCGGGCGTCGATATGACAAAAGCAGATTATATTGAAGACGCGATGAA
AGTATTTGAGCAACGCTTGAATGAATTGGAAGAACTCGTCAAAGAAATTGAAGCATAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(207-587)

Oligopeptidase F (Peptidase_M3_N)

(117-186)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

56.155

98.017

0.55

Multiple sequence alignment