Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   ACM1TL_RS17370 Genome accession   NZ_CP181080
Coordinates   3374037..3375413 (-) Length   458 a.a.
NCBI ID   WP_004233577.1    Uniprot ID   A0A2X0Y605
Organism   Lysinibacillus capsici strain S2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3369037..3380413
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACM1TL_RS17350 (ACM1TL_17350) ispF 3370088..3370564 (-) 477 WP_048395542.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  ACM1TL_RS17355 (ACM1TL_17355) epsC 3370706..3371647 (-) 942 WP_004233580.1 serine O-acetyltransferase EpsC -
  ACM1TL_RS17360 (ACM1TL_17360) ispD 3371962..3372657 (-) 696 WP_048395541.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  ACM1TL_RS17365 (ACM1TL_17365) - 3372669..3373754 (-) 1086 WP_004233578.1 PIN/TRAM domain-containing protein -
  ACM1TL_RS17370 (ACM1TL_17370) radA 3374037..3375413 (-) 1377 WP_004233577.1 DNA repair protein RadA Machinery gene
  ACM1TL_RS17375 (ACM1TL_17375) - 3375505..3377949 (-) 2445 WP_048395540.1 ATP-dependent Clp protease ATP-binding subunit -
  ACM1TL_RS17380 (ACM1TL_17380) - 3377939..3379048 (-) 1110 WP_048395539.1 protein arginine kinase -
  ACM1TL_RS17385 (ACM1TL_17385) - 3379045..3379587 (-) 543 WP_004233574.1 UvrB/UvrC motif-containing protein -
  ACM1TL_RS17390 (ACM1TL_17390) - 3379601..3380071 (-) 471 WP_416141229.1 CtsR family transcriptional regulator -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 50187.01 Da        Isoelectric Point: 7.3825

>NTDB_id=1098053 ACM1TL_RS17370 WP_004233577.1 3374037..3375413(-) (radA) [Lysinibacillus capsici strain S2]
MAKKKTKFVCSGCGYESAKWMGRCPGCGEWNKMVEEVEMVAKGPRGAFQHSATVTQKAIPIIQVEATEESRVATEMGELN
RVLGGGIVPGSLVLIGGDPGIGKSTLLLQVSALLSNKGHRVLYISGEESIRQTKLRAERLGVISQELYIYSETNLEFLNQ
TIDEVQPKFVIVDSIQTVFHPEVTSAPGSVSQVRECTAELMRIAKTKGIAIFLVGHVTKEGQIAGPRILEHMVDTVLYFE
GERHHNHRILRSQKNRFGSTNEIAIFEMLQGGLKEVLNPSELFLQERSQGAAGSTIVASMEGTRPILVEIQSLVTPTSFN
YPKRMATGVDQNRVQLLMAVLEKRMGLMLQAQDAYIKVAGGVKLDEPAIDLAVLTSIVSSFKDQAVRATDCFIGEVGLTG
EVRRVSRIEQRVIEAAKLGFKRAFIPSSNIGGWEFPQGIEIVGVETIKDALNACFREL

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=1098053 ACM1TL_RS17370 WP_004233577.1 3374037..3375413(-) (radA) [Lysinibacillus capsici strain S2]
TTGGCAAAGAAAAAAACGAAATTTGTATGTTCAGGCTGTGGCTATGAATCTGCTAAATGGATGGGAAGATGCCCTGGATG
TGGTGAATGGAATAAAATGGTGGAAGAAGTAGAAATGGTTGCAAAAGGCCCACGTGGAGCATTTCAACATTCTGCTACAG
TTACTCAAAAGGCAATCCCGATTATCCAAGTGGAAGCTACTGAAGAATCGCGCGTAGCAACAGAAATGGGCGAACTCAAT
CGTGTATTAGGCGGTGGCATTGTACCTGGTTCTCTAGTATTAATTGGGGGTGATCCTGGAATAGGGAAATCAACATTACT
ATTACAGGTTTCCGCATTACTCTCGAATAAAGGGCATCGCGTACTTTATATTTCTGGAGAGGAATCTATTCGTCAAACGA
AATTACGAGCAGAGCGTTTAGGAGTGATTTCTCAAGAGCTCTACATATACTCCGAAACAAACCTAGAGTTTTTAAACCAA
ACCATTGATGAAGTACAACCTAAATTTGTCATTGTGGATTCCATACAAACGGTCTTTCATCCAGAAGTAACAAGCGCCCC
AGGTAGTGTCTCACAGGTTCGTGAATGTACAGCCGAGCTGATGCGAATCGCTAAAACAAAAGGTATTGCTATTTTTCTAG
TAGGGCATGTCACAAAAGAGGGACAAATTGCAGGGCCACGTATTTTAGAGCATATGGTGGATACTGTACTGTACTTTGAA
GGGGAGAGACATCATAATCATCGTATTTTACGAAGCCAAAAAAACCGCTTCGGATCTACAAATGAAATTGCTATATTTGA
AATGCTTCAAGGTGGGTTAAAGGAAGTTCTAAACCCTTCTGAGTTATTTTTACAGGAGCGTTCACAAGGTGCGGCGGGGT
CAACTATTGTAGCCTCAATGGAGGGGACAAGGCCAATCCTTGTTGAAATTCAATCCTTAGTTACGCCTACGAGCTTTAAC
TATCCTAAACGTATGGCCACAGGTGTCGATCAAAACCGAGTACAATTGCTAATGGCTGTACTAGAAAAGCGTATGGGTCT
CATGCTACAAGCTCAGGATGCATATATTAAAGTTGCTGGTGGTGTCAAGCTGGATGAGCCAGCAATAGATTTAGCGGTGT
TGACAAGCATTGTATCTAGTTTTAAGGATCAGGCAGTGCGTGCAACGGATTGCTTTATTGGTGAGGTCGGACTGACAGGT
GAGGTCCGTCGGGTATCACGTATAGAACAGCGAGTCATTGAAGCGGCGAAGCTTGGATTTAAAAGAGCTTTCATTCCTTC
TTCGAATATTGGTGGTTGGGAATTTCCGCAGGGAATTGAAATTGTTGGTGTAGAAACGATAAAAGATGCACTAAATGCAT
GCTTTAGAGAGTTATAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(346-429)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(64-221)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2X0Y605

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

70.705

99.127

0.701
  radA Streptococcus pneumoniae Rx1

62.281

99.563

0.62
  radA Streptococcus pneumoniae D39

62.281

99.563

0.62
  radA Streptococcus pneumoniae R6

62.281

99.563

0.62
  radA Streptococcus pneumoniae TIGR4

62.281

99.563

0.62
  radA Streptococcus mitis NCTC 12261

62.281

99.563

0.62
  radA Streptococcus mitis SK321

62.281

99.563

0.62

Multiple sequence alignment