Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   ACM1TL_RS09215 Genome accession   NZ_CP181080
Coordinates   1776443..1778134 (-) Length   563 a.a.
NCBI ID   WP_269898197.1    Uniprot ID   -
Organism   Lysinibacillus capsici strain S2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1771443..1783134
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACM1TL_RS09200 (ACM1TL_09200) - 1771862..1773433 (-) 1572 WP_048392301.1 DUF342 domain-containing protein -
  ACM1TL_RS09205 (ACM1TL_09205) spo0A 1774197..1774988 (-) 792 WP_016993890.1 sporulation transcription factor Spo0A -
  ACM1TL_RS09210 (ACM1TL_09210) - 1775373..1776320 (-) 948 WP_048392300.1 SpoIVB peptidase S55 domain-containing protein -
  ACM1TL_RS09215 (ACM1TL_09215) recN 1776443..1778134 (-) 1692 WP_269898197.1 DNA repair protein RecN Machinery gene
  ACM1TL_RS09220 (ACM1TL_09220) ahrC 1778168..1778617 (-) 450 WP_004231170.1 transcriptional regulator AhrC/ArgR -
  ACM1TL_RS09225 (ACM1TL_09225) - 1778718..1779536 (-) 819 WP_416141841.1 TlyA family RNA methyltransferase -
  ACM1TL_RS09230 (ACM1TL_09230) dxs 1779536..1781437 (-) 1902 WP_048392297.1 1-deoxy-D-xylulose-5-phosphate synthase -
  ACM1TL_RS09235 (ACM1TL_09235) - 1781601..1782482 (-) 882 WP_054549165.1 polyprenyl synthetase family protein -
  ACM1TL_RS09240 (ACM1TL_09240) xseB 1782486..1782719 (-) 234 WP_008179899.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 563 a.a.        Molecular weight: 63450.27 Da        Isoelectric Point: 4.6447

>NTDB_id=1098043 ACM1TL_RS09215 WP_269898197.1 1776443..1778134(-) (recN) [Lysinibacillus capsici strain S2]
MLRELSIRNFAIIEDLTVSFLEGLTVLTGETGAGKSIIIDAVHLLAGGRGNTEFIRHGARKAELGGLFQISSSVHPVLKK
LEEAGIEIEEDTIILRRDLNDTGKSICRVNGKLVPLSVLRDIGASLIDIHGQHENQELMDEKQHINLLDQFAEEELSPIQ
KNYRAQYDEYRLLKKDLASISIDEQLMAQRIDLYQFQIKELDEANLKLGEEDELLDERRRLMNFNKIFERSSAAYEAIQG
ETKGLDWIGTAMGALEDAATVDEQFKESSEAVTTAFYALQDAAYQVKNVLDELEFDPARLNEVEQRLALLQTLKRKYGTT
VEEILAYYEKIKNELNELLNRDEILQVKERRVLEMEAVLNELASELSTVRKAAAQQLSEAIMAELRELHMEKAKFIVNFD
ELPYFDANGKDQIIFYISTNVGEPPKSLPKIASGGELSRMMLALKTIFSSSNGITSIIFDEVDTGVSGRVAQAIAEKIAA
ISVNSQVLCISHLPQVAAMADHHYFIKKEVEHDRTFTSLSEINQDARIEEVSRMMSGTEITALTLQHATELLKMADERKK
QMR

Nucleotide


Download         Length: 1692 bp        

>NTDB_id=1098043 ACM1TL_RS09215 WP_269898197.1 1776443..1778134(-) (recN) [Lysinibacillus capsici strain S2]
GTGTTAAGAGAGCTTAGTATTCGAAACTTTGCCATCATTGAGGATTTGACTGTCAGCTTTTTAGAAGGCTTAACAGTTCT
CACTGGGGAAACAGGTGCCGGAAAATCTATTATCATTGATGCGGTGCATTTACTTGCAGGAGGACGAGGCAACACTGAAT
TTATTCGTCATGGCGCAAGAAAAGCAGAATTGGGTGGCTTATTTCAAATTTCGAGTTCAGTTCATCCTGTTCTGAAAAAG
TTAGAAGAAGCAGGCATTGAAATAGAAGAAGATACAATTATTTTACGTCGTGATTTGAATGATACCGGTAAAAGTATTTG
CCGAGTGAATGGTAAGCTCGTGCCTTTGTCGGTACTAAGAGACATTGGGGCAAGTCTCATAGATATTCATGGCCAACATG
AAAATCAAGAGCTAATGGATGAAAAGCAGCACATCAATTTGCTTGATCAATTTGCAGAAGAAGAGCTGTCGCCGATTCAA
AAAAACTATCGCGCTCAATATGATGAATACCGTTTGCTCAAAAAAGACTTAGCTTCTATATCCATTGATGAGCAGTTGAT
GGCACAACGTATCGATTTGTATCAATTTCAAATTAAAGAGTTGGACGAAGCTAATTTAAAGTTAGGTGAGGAAGACGAAC
TTCTAGACGAACGCCGTCGTCTGATGAATTTTAATAAAATTTTTGAACGTTCTAGTGCAGCCTATGAAGCCATTCAGGGC
GAAACGAAAGGGCTTGATTGGATCGGAACAGCAATGGGTGCTTTAGAAGATGCTGCAACGGTTGATGAACAATTCAAAGA
ATCATCTGAGGCAGTGACAACTGCGTTTTATGCATTACAGGATGCAGCCTATCAGGTCAAAAATGTGTTAGATGAATTGG
AATTTGACCCTGCACGTTTAAACGAGGTTGAGCAGCGTTTAGCGTTGTTGCAAACTTTAAAACGCAAATATGGAACGACA
GTGGAAGAGATTTTGGCTTATTATGAAAAAATTAAAAACGAGTTAAATGAGCTGTTGAATCGTGATGAGATTTTGCAGGT
GAAAGAACGACGTGTATTAGAGATGGAAGCTGTACTCAATGAGCTGGCTAGTGAACTTTCAACTGTACGTAAAGCTGCAG
CTCAACAATTGAGTGAAGCAATTATGGCAGAGCTACGTGAATTACATATGGAAAAAGCAAAATTTATTGTCAATTTCGAT
GAATTACCCTATTTCGATGCCAATGGGAAAGATCAAATTATCTTCTACATTTCCACAAACGTTGGGGAACCACCAAAGTC
TTTACCGAAAATTGCATCAGGTGGAGAATTATCACGAATGATGCTTGCGTTGAAAACCATTTTCTCTTCTTCCAATGGAA
TTACTTCCATTATCTTTGATGAGGTGGATACAGGTGTCAGTGGTCGTGTTGCGCAGGCAATTGCAGAGAAAATTGCCGCG
ATTTCTGTTAATTCTCAAGTTTTATGTATTTCACATTTACCTCAAGTTGCAGCGATGGCTGATCATCATTACTTCATTAA
AAAAGAAGTCGAGCATGATCGAACGTTTACTTCCTTATCAGAAATTAATCAAGATGCTCGAATAGAGGAAGTTAGCCGTA
TGATGTCTGGAACGGAAATTACAGCGTTAACACTACAGCATGCCACGGAGCTTTTAAAAATGGCAGATGAACGAAAAAAA
CAAATGCGTTAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-509)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

52.34

100

0.536

Multiple sequence alignment