Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   ACMXUA_RS12600 Genome accession   NZ_CP181076
Coordinates   2576281..2576907 (-) Length   208 a.a.
NCBI ID   WP_023299743.1    Uniprot ID   A0A9X7L0J6
Organism   Enterobacter hormaechei strain CYEBC080     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2571281..2581907
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACMXUA_RS12585 (ACMXUA_12585) helD 2571520..2573574 (-) 2055 WP_032676335.1 DNA helicase IV -
  ACMXUA_RS12590 (ACMXUA_12590) - 2573697..2574143 (+) 447 WP_023299745.1 YccF domain-containing protein -
  ACMXUA_RS12595 (ACMXUA_12595) yccS 2574162..2576324 (+) 2163 WP_023305820.1 YccS family putative transporter -
  ACMXUA_RS12600 (ACMXUA_12600) sxy/tfoX 2576281..2576907 (-) 627 WP_023299743.1 TfoX/Sxy family DNA transformation protein Regulator
  ACMXUA_RS12605 (ACMXUA_12605) sulA 2577125..2577634 (+) 510 WP_032610196.1 SOS-induced cell division inhibitor SulA -
  ACMXUA_RS12610 (ACMXUA_12610) ompA 2577991..2579043 (+) 1053 WP_416136405.1 porin OmpA -
  ACMXUA_RS12615 (ACMXUA_12615) matP 2579109..2579561 (-) 453 WP_006809347.1 macrodomain Ter protein MatP -
  ACMXUA_RS12620 (ACMXUA_12620) - 2579748..2581508 (+) 1761 WP_023305819.1 AAA family ATPase -

Sequence

Protein


Download         Length: 208 a.a.        Molecular weight: 23988.54 Da        Isoelectric Point: 9.4592

>NTDB_id=1098022 ACMXUA_RS12600 WP_023299743.1 2576281..2576907(-) (sxy/tfoX) [Enterobacter hormaechei strain CYEBC080]
MKKISYDRIYQSQEYLSPLGEIHHRALFGGYTLAVDEAVFAMVSDGELYLRACEQSAKYCVKNASSFLTLMKRGRPVLLN
YYRVDEGLWQNREKLLQLSSFALDAARKERYQRHQRNRLKDLPNLTFQIEVLLMEAGITNEETLRQLGAKTSWLKMRSKN
KALSIRVLFALEGAIEGLHEAALPADIRRELTEWFNALPESQGHHSAR

Nucleotide


Download         Length: 627 bp        

>NTDB_id=1098022 ACMXUA_RS12600 WP_023299743.1 2576281..2576907(-) (sxy/tfoX) [Enterobacter hormaechei strain CYEBC080]
ATGAAAAAGATATCTTATGATCGGATTTATCAATCTCAAGAATACCTCTCTCCGCTGGGCGAAATTCATCATCGCGCCCT
GTTTGGCGGTTATACCCTGGCCGTGGATGAAGCGGTATTCGCGATGGTGTCTGACGGTGAGCTTTACCTTCGCGCCTGTG
AGCAAAGTGCAAAATACTGTGTAAAAAACGCCTCTTCTTTTCTGACCCTGATGAAACGAGGACGTCCTGTGCTGCTTAAT
TACTACCGTGTGGATGAAGGTCTGTGGCAAAACAGGGAAAAACTGCTTCAGCTCTCCTCGTTTGCGCTCGATGCCGCCAG
GAAAGAGCGCTACCAGCGCCATCAGCGTAACCGGCTTAAAGATCTGCCGAACCTGACCTTTCAGATTGAGGTCCTGCTTA
TGGAGGCGGGCATTACTAATGAAGAGACGCTACGACAGTTGGGGGCGAAGACGAGCTGGCTGAAAATGCGCTCTAAGAAT
AAAGCGCTGAGTATCCGGGTATTGTTCGCGCTTGAAGGCGCGATTGAAGGGTTACATGAAGCGGCACTCCCGGCGGATAT
TCGCCGGGAGCTTACGGAGTGGTTTAATGCGCTGCCTGAGTCGCAGGGCCATCATTCCGCCAGGTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

58.911

97.115

0.572

Multiple sequence alignment