Detailed information    

insolico Bioinformatically predicted

Overview

Name   HI0659   Type   Machinery gene
Locus tag   ABXG87_RS06315 Genome accession   NZ_AP031488
Coordinates   1378935..1379237 (-) Length   100 a.a.
NCBI ID   WP_045768898.1    Uniprot ID   A0AAX1YB66
Organism   Streptococcus salivarius strain NBRC 13956     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1373935..1384237
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABXG87_RS06300 (Ssa13956_11840) - 1374142..1374612 (-) 471 WP_353551251.1 restriction endonuclease subunit S -
  ABXG87_RS06305 (Ssa13956_11850) - 1374625..1375758 (-) 1134 WP_045768896.1 AbiH family protein -
  ABXG87_RS06310 (Ssa13956_11860) - 1375781..1378771 (-) 2991 WP_045768897.1 type I restriction endonuclease subunit R -
  ABXG87_RS06315 (Ssa13956_11870) HI0659 1378935..1379237 (-) 303 WP_045768898.1 helix-turn-helix transcriptional regulator Machinery gene
  ABXG87_RS06320 (Ssa13956_11880) - 1379239..1379592 (-) 354 WP_045768899.1 type II toxin-antitoxin system RelE/ParE family toxin -
  ABXG87_RS06325 (Ssa13956_11890) - 1379829..1380593 (-) 765 WP_045768900.1 SDR family NAD(P)-dependent oxidoreductase -
  ABXG87_RS06330 (Ssa13956_11900) - 1380625..1381782 (-) 1158 WP_353551254.1 Mbeg1-like protein -
  ABXG87_RS06335 (Ssa13956_11910) - 1381892..1382518 (+) 627 WP_353551256.1 Pr6Pr family membrane protein -
  ABXG87_RS06340 (Ssa13956_11920) - 1382556..1383398 (-) 843 WP_164373539.1 HAD family hydrolase -
  ABXG87_RS06345 (Ssa13956_11930) - 1383550..1383939 (+) 390 WP_004182763.1 hypothetical protein -

Sequence

Protein


Download         Length: 100 a.a.        Molecular weight: 10979.96 Da        Isoelectric Point: 10.0576

>NTDB_id=109802 ABXG87_RS06315 WP_045768898.1 1378935..1379237(-) (HI0659) [Streptococcus salivarius strain NBRC 13956]
MTLEKNPAIGSSWDDLQKTIFTKEEIAASELRVALMLEIIDARKKQGISQKKLEELSGVKQPVIARMEKGKTAPQLDTVL
KILASLGKTLAVVPLDSHVK

Nucleotide


Download         Length: 303 bp        

>NTDB_id=109802 ABXG87_RS06315 WP_045768898.1 1378935..1379237(-) (HI0659) [Streptococcus salivarius strain NBRC 13956]
ATGACCCTAGAAAAGAATCCAGCAATTGGAAGTAGTTGGGATGATTTACAGAAAACTATTTTCACTAAAGAGGAAATTGC
GGCGAGTGAACTCCGTGTCGCACTGATGCTTGAGATTATTGATGCTCGTAAAAAACAAGGCATTTCCCAAAAGAAACTAG
AAGAGCTAAGTGGTGTCAAACAACCTGTTATCGCACGTATGGAGAAAGGAAAAACGGCACCTCAGTTAGATACGGTTCTT
AAAATACTGGCTAGTCTAGGAAAGACATTGGCAGTAGTCCCACTTGATTCACATGTGAAGTAA

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(41-91)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  HI0659 Haemophilus influenzae Rd KW20

62.069

87

0.54

Multiple sequence alignment