Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   ACMXUA_RS00390 Genome accession   NZ_CP181076
Coordinates   88598..90031 (-) Length   477 a.a.
NCBI ID   WP_022649530.1    Uniprot ID   A0AAI9D3Q5
Organism   Enterobacter hormaechei strain CYEBC080     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 83598..95031
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACMXUA_RS00360 (ACMXUA_00360) elbB 85130..85783 (+) 654 WP_023298722.1 isoprenoid biosynthesis glyoxalase ElbB -
  ACMXUA_RS00365 (ACMXUA_00365) mtgA 85780..86505 (+) 726 WP_023298721.1 monofunctional biosynthetic peptidoglycan transglycosylase -
  ACMXUA_RS00370 (ACMXUA_00370) npr 86545..86817 (-) 273 WP_003861872.1 PTS phosphocarrier protein NPr -
  ACMXUA_RS00375 (ACMXUA_00375) rapZ 86814..87668 (-) 855 WP_003861870.1 RNase adapter RapZ -
  ACMXUA_RS00380 (ACMXUA_00380) ptsN 87714..88205 (-) 492 WP_003861869.1 PTS IIA-like nitrogen regulatory protein PtsN -
  ACMXUA_RS00385 (ACMXUA_00385) hpf 88288..88575 (-) 288 WP_014171818.1 ribosome hibernation promoting factor -
  ACMXUA_RS00390 (ACMXUA_00390) rpoN/rpoN1 88598..90031 (-) 1434 WP_022649530.1 RNA polymerase factor sigma-54 Machinery gene
  ACMXUA_RS00395 (ACMXUA_00395) lptB 90079..90804 (-) 726 WP_003861862.1 LPS export ABC transporter ATP-binding protein -
  ACMXUA_RS00400 (ACMXUA_00400) lptA 90811..91365 (-) 555 WP_006812136.1 lipopolysaccharide ABC transporter substrate-binding protein LptA -
  ACMXUA_RS00405 (ACMXUA_00405) lptC 91334..91909 (-) 576 WP_022649529.1 LPS export ABC transporter periplasmic protein LptC -
  ACMXUA_RS00410 (ACMXUA_00410) kdsC 91906..92472 (-) 567 WP_017382729.1 3-deoxy-manno-octulosonate-8-phosphatase KdsC -
  ACMXUA_RS00415 (ACMXUA_00415) kdsD 92487..93473 (-) 987 WP_003861853.1 arabinose-5-phosphate isomerase KdsD -
  ACMXUA_RS00420 (ACMXUA_00420) - 93487..94464 (-) 978 WP_003861852.1 calcium/sodium antiporter -

Sequence

Protein


Download         Length: 477 a.a.        Molecular weight: 54128.02 Da        Isoelectric Point: 4.3409

>NTDB_id=1098011 ACMXUA_RS00390 WP_022649530.1 88598..90031(-) (rpoN/rpoN1) [Enterobacter hormaechei strain CYEBC080]
MKQGLQLRLSQQLAMTPQLQQAIRLLQLSTLELQQELQQALDSNPLLEQTDLHDEVDAQQTQDTETLDSVDALEQKEMPE
ELPLDASWDEIYTAGTPSGTRADYQDDELPVYQGETTQSLQDYLMWQVELTPFSDTDRAIATSIVDAVDDTGYLTVTLDE
ILESIGDDEIELEEIEAVLKRVQRFDPIGVAAKDLRDCLLIQLSQFAKETPWIDEARLIISEHLDLLANHDFRTLMRVTR
LKEEVLKEAVNLIQSLDPRPGQSIQTSEPEYVIPDVLVRKHNGRWVVELNADSIPRLQINQQYASMCTSARNDADNQYIR
SNLQEARWLIKSLESRNDTLLRVSRCIVEQQQAFFEQGEEFMKPMVLADIAQAVEMHESTISRVTTQKYLHSPRGIFELK
YFFSSHVNTEGGGEASSTAIRALVKKLIAAENPAKPLSDSKLTTMLSDQGIMVARRTVAKYRESLSIPPSNQRKQLV

Nucleotide


Download         Length: 1434 bp        

>NTDB_id=1098011 ACMXUA_RS00390 WP_022649530.1 88598..90031(-) (rpoN/rpoN1) [Enterobacter hormaechei strain CYEBC080]
ATGAAGCAAGGTTTGCAATTACGGCTCAGCCAGCAACTGGCCATGACGCCGCAGCTACAACAGGCAATCCGTCTGTTGCA
GCTGTCCACGTTAGAACTCCAGCAGGAGCTCCAGCAGGCGCTGGACAGCAATCCGCTGCTGGAGCAAACCGATCTTCATG
ACGAGGTAGACGCTCAGCAGACGCAGGACACAGAAACGCTCGACTCCGTAGATGCGCTCGAACAGAAAGAGATGCCGGAG
GAACTGCCGCTGGATGCCAGCTGGGATGAAATCTACACCGCGGGTACCCCTTCCGGGACGCGTGCAGATTACCAGGACGA
TGAACTCCCGGTCTACCAGGGCGAAACTACCCAGTCGCTTCAGGACTACCTGATGTGGCAGGTGGAGCTGACGCCTTTCT
CCGATACCGATCGCGCCATTGCCACCTCGATTGTCGATGCCGTTGACGACACGGGCTATTTGACCGTGACGCTGGACGAG
ATTCTGGAAAGCATCGGCGATGACGAGATTGAACTGGAAGAGATCGAAGCCGTCCTGAAACGCGTTCAGCGTTTCGACCC
GATTGGCGTTGCTGCGAAAGATCTGCGCGACTGCCTTCTGATCCAGCTTTCGCAGTTTGCCAAAGAGACACCGTGGATTG
ACGAAGCCCGGCTCATCATCAGCGAGCATCTGGATTTGCTGGCAAATCACGACTTCCGCACCCTGATGCGCGTCACGCGC
CTCAAAGAAGAGGTGCTGAAGGAAGCGGTGAATCTGATCCAGTCACTCGATCCGCGTCCGGGGCAATCGATCCAGACCAG
CGAACCGGAATACGTTATTCCTGATGTGCTGGTGAGAAAACACAATGGCCGCTGGGTCGTTGAACTGAACGCCGACAGCA
TTCCTCGCCTGCAAATCAACCAGCAATACGCCTCCATGTGCACCAGCGCCCGTAACGACGCTGATAATCAATACATTCGC
AGCAACCTTCAGGAAGCACGCTGGTTGATTAAGAGTCTGGAAAGCCGTAATGACACGCTGCTGCGCGTCAGCCGCTGTAT
TGTCGAACAGCAGCAGGCATTCTTTGAGCAGGGCGAAGAGTTTATGAAACCGATGGTGCTGGCGGACATCGCCCAGGCCG
TCGAGATGCATGAATCAACCATTTCCCGCGTGACCACGCAGAAGTATCTGCACAGCCCACGCGGTATTTTTGAGCTTAAG
TATTTCTTCTCCAGCCACGTGAACACCGAAGGCGGCGGCGAAGCCTCGTCAACGGCTATTCGCGCACTGGTGAAGAAGTT
GATCGCCGCGGAGAACCCCGCGAAGCCACTCAGTGACAGTAAGTTAACCACCATGCTGTCCGATCAGGGTATTATGGTGG
CACGCCGTACTGTCGCGAAGTATCGAGAGTCTTTATCCATTCCGCCGTCTAACCAGCGTAAACAACTGGTTTGA

Domains

Predicted by InterProScan.

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(5-48)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(116-303)

Sigma-54, DNA binding domain (Sigma54_DBD)

(317-475)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

45.347

100

0.48

Multiple sequence alignment