Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   ACM1PH_RS13000 Genome accession   NZ_CP181055
Coordinates   2459267..2460217 (+) Length   316 a.a.
NCBI ID   WP_416143962.1    Uniprot ID   -
Organism   Planococcus koreensis strain OC-PG-Soil     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2454267..2465217
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACM1PH_RS12985 (ACM1PH_12985) - 2454903..2455625 (+) 723 WP_416143961.1 VOC family protein -
  ACM1PH_RS12990 (ACM1PH_12990) hflX 2455736..2457007 (+) 1272 WP_135504152.1 GTPase HflX -
  ACM1PH_RS12995 (ACM1PH_12995) - 2457067..2458785 (-) 1719 WP_135504150.1 ABC transporter ATP-binding protein -
  ACM1PH_RS13000 (ACM1PH_13000) ceuB 2459267..2460217 (+) 951 WP_416143962.1 ABC transporter permease Machinery gene
  ACM1PH_RS13005 (ACM1PH_13005) - 2460210..2461160 (+) 951 WP_416143963.1 iron chelate uptake ABC transporter family permease subunit -
  ACM1PH_RS13010 (ACM1PH_13010) - 2461157..2461917 (+) 761 Protein_2562 ABC transporter ATP-binding protein -
  ACM1PH_RS13015 (ACM1PH_13015) - 2461958..2462907 (+) 950 Protein_2563 siderophore ABC transporter substrate-binding protein -
  ACM1PH_RS13020 (ACM1PH_13020) - 2463075..2463689 (+) 615 WP_135504140.1 phosphatase PAP2 family protein -
  ACM1PH_RS13025 (ACM1PH_13025) - 2463735..2465015 (-) 1281 WP_416143964.1 ammonium transporter -

Sequence

Protein


Download         Length: 316 a.a.        Molecular weight: 34757.03 Da        Isoelectric Point: 10.1713

>NTDB_id=1097966 ACM1PH_RS13000 WP_416143962.1 2459267..2460217(+) (ceuB) [Planococcus koreensis strain OC-PG-Soil]
MKKRILIPILVILSFVSLFVGVSSISPIDLLDFQSEETQIFLISRLPRLVAILLAGAGMSMAGLIMQQLSRNKFVSPTTA
GTLDATRLGILVSMLLFANASMFEKMAVAFAFALAGTFLFMQILGRIKFKDAIFIPLVGLMFGNILSSITTFFAYRADVI
QNMSAWLQGDFSMIMKGSYELLYISVPVFIIAYIYANRFTVAGMGEDFSKNLGLKYRSVVNIGLVLVALITATVVLTVGM
IPFLGLIIPNIVSIFKGDHLQKTLPHTAMLGAIFLLLCDILGRVLIYPYEISISLMVGVIGSAIFLFLLFRRRAYA

Nucleotide


Download         Length: 951 bp        

>NTDB_id=1097966 ACM1PH_RS13000 WP_416143962.1 2459267..2460217(+) (ceuB) [Planococcus koreensis strain OC-PG-Soil]
ATGAAGAAACGCATTTTAATACCCATATTGGTCATACTGTCATTCGTCTCTTTGTTTGTCGGAGTCAGTTCAATCAGCCC
GATTGATTTGCTGGACTTTCAGTCGGAGGAAACGCAGATATTCCTGATCAGCCGCCTGCCGCGGCTGGTTGCGATTTTAT
TGGCGGGCGCTGGAATGAGCATGGCAGGGCTCATCATGCAGCAATTGAGCCGCAATAAATTTGTTTCTCCGACAACGGCC
GGCACGCTCGACGCCACGCGGCTTGGGATTCTGGTGTCGATGCTGTTGTTCGCCAATGCAAGCATGTTTGAAAAGATGGC
CGTGGCCTTTGCTTTTGCGCTTGCCGGAACCTTTCTCTTCATGCAGATTTTGGGCCGCATCAAGTTCAAGGATGCGATTT
TCATCCCGCTTGTCGGGTTGATGTTCGGCAACATCCTGTCTTCGATCACCACTTTTTTCGCTTATCGGGCAGACGTTATC
CAGAATATGTCGGCTTGGCTGCAAGGTGATTTTTCCATGATCATGAAAGGCAGCTACGAATTGCTCTACATCAGTGTGCC
TGTTTTCATCATCGCCTATATTTACGCCAACCGCTTTACAGTCGCAGGTATGGGGGAGGACTTTTCCAAGAACCTCGGCT
TGAAATACCGCAGCGTCGTCAACATCGGTCTGGTGCTCGTAGCGTTGATTACCGCAACAGTCGTGCTGACGGTCGGCATG
ATCCCGTTCCTCGGGCTCATCATCCCGAATATCGTCTCCATTTTCAAAGGGGACCATTTGCAAAAGACATTGCCCCATAC
TGCGATGCTCGGTGCGATTTTCTTGTTGCTCTGTGACATTTTAGGCAGGGTGCTCATTTATCCGTACGAAATTTCGATCA
GCTTGATGGTTGGCGTCATCGGCAGCGCCATCTTCCTGTTCCTGTTGTTTAGGAGGAGGGCATATGCGTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(9-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

53.355

99.051

0.528

Multiple sequence alignment