Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   ACM1PH_RS11340 Genome accession   NZ_CP181055
Coordinates   2164238..2165617 (+) Length   459 a.a.
NCBI ID   WP_416145581.1    Uniprot ID   -
Organism   Planococcus koreensis strain OC-PG-Soil     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2159238..2170617
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACM1PH_RS11315 (ACM1PH_11315) - 2159240..2159485 (+) 246 WP_290213311.1 hypothetical protein -
  ACM1PH_RS11320 (ACM1PH_11320) - 2159640..2160110 (+) 471 WP_135500592.1 CtsR family transcriptional regulator -
  ACM1PH_RS11325 (ACM1PH_11325) - 2160122..2160655 (+) 534 WP_135500593.1 UvrB/UvrC motif-containing protein -
  ACM1PH_RS11330 (ACM1PH_11330) - 2160645..2161736 (+) 1092 WP_416143829.1 protein arginine kinase -
  ACM1PH_RS11335 (ACM1PH_11335) - 2161733..2164174 (+) 2442 WP_135500595.1 ATP-dependent Clp protease ATP-binding subunit -
  ACM1PH_RS11340 (ACM1PH_11340) radA 2164238..2165617 (+) 1380 WP_416145581.1 DNA repair protein RadA Machinery gene
  ACM1PH_RS11345 (ACM1PH_11345) - 2165711..2166811 (+) 1101 WP_135500597.1 PIN/TRAM domain-containing protein -
  ACM1PH_RS11350 (ACM1PH_11350) ispD 2166825..2167520 (+) 696 WP_416143830.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  ACM1PH_RS11355 (ACM1PH_11355) ispF 2167517..2168017 (+) 501 WP_135500599.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  ACM1PH_RS11360 (ACM1PH_11360) gltX 2168061..2169524 (+) 1464 WP_135500600.1 glutamate--tRNA ligase -
  ACM1PH_RS11365 (ACM1PH_11365) cysE 2169836..2170498 (+) 663 WP_135500601.1 serine O-acetyltransferase -

Sequence

Protein


Download         Length: 459 a.a.        Molecular weight: 50120.56 Da        Isoelectric Point: 6.1283

>NTDB_id=1097964 ACM1PH_RS11340 WP_416145581.1 2164238..2165617(+) (radA) [Planococcus koreensis strain OC-PG-Soil]
MAKKKSKFICQSCGYESAKWMGKCPGCGEWNQMVEEVEVAAPKGTRGAFQHSASVPQKATPINTIETQDEPRVDTKMGEM
NRVLGGGIVPGSLVLIGGDPGIGKSTLLLQVSAMLANNGNRVLYISGEESIRQTKLRAERLDASSPELFIYAETNLELIH
HTIEDVAPDFVIIDSIQTVYHPEVTSAPGSVTQVRESTAELMRIAKTKNIAIFLVGHVTKEGQIAGPRILEHMVDTVLYF
EGERHHTYRILRSVKNRFGSTNEIAIFEMLQGGLVEVLNPSELFLQERSSGAAGSTVVASMEGTRPILVEIQALVTQSSF
NYPKRMATGIDQNRISLLMAVLEKRVGMLLQSQDAYIKVAGGVKLDEPAIDLAVLASIVSSYRDIAPNVYDCIIGEVGLT
GEVRRVSRIEQRVQEAAKLGFKRAIIPASNLGGWDYPEGIRVVGVESVNDALKEIFPQQ

Nucleotide


Download         Length: 1380 bp        

>NTDB_id=1097964 ACM1PH_RS11340 WP_416145581.1 2164238..2165617(+) (radA) [Planococcus koreensis strain OC-PG-Soil]
ATGGCTAAGAAAAAGTCGAAGTTTATCTGTCAGTCTTGCGGCTATGAGTCTGCTAAATGGATGGGCAAATGCCCAGGCTG
CGGTGAGTGGAACCAAATGGTGGAAGAAGTTGAAGTGGCAGCGCCTAAAGGGACGCGCGGCGCATTCCAGCATTCGGCTT
CAGTGCCTCAAAAAGCTACGCCAATCAACACGATTGAAACCCAGGATGAACCACGGGTGGATACAAAAATGGGCGAGATG
AACCGTGTGCTTGGCGGCGGGATCGTGCCGGGTTCGCTCGTGCTCATCGGCGGCGATCCGGGCATCGGAAAATCGACGCT
GCTTCTTCAAGTATCGGCAATGCTTGCGAACAACGGCAATCGGGTATTGTATATTTCCGGAGAAGAATCGATTCGCCAGA
CGAAGCTGCGCGCAGAGCGTTTGGATGCTTCTTCGCCGGAATTATTCATCTATGCAGAAACGAATTTGGAATTGATTCAT
CATACCATCGAAGATGTGGCCCCTGATTTTGTCATTATCGATTCCATTCAGACGGTTTATCATCCGGAAGTGACGTCTGC
GCCGGGCAGTGTCACGCAAGTGCGGGAAAGTACCGCCGAATTGATGCGTATTGCCAAAACCAAGAATATCGCGATTTTTC
TGGTCGGCCATGTGACAAAAGAAGGGCAGATTGCAGGTCCGCGTATTTTGGAGCATATGGTGGATACGGTGCTGTATTTT
GAAGGTGAGCGGCACCATACGTACCGAATTTTGCGCAGCGTAAAAAACCGTTTCGGCTCGACCAATGAAATCGCCATTTT
TGAAATGCTGCAAGGCGGCTTGGTGGAAGTGCTGAATCCGTCGGAACTATTTCTGCAAGAGCGCTCGAGCGGAGCGGCCG
GTTCAACCGTCGTCGCATCGATGGAAGGCACGCGGCCGATTCTGGTTGAAATCCAGGCACTGGTGACGCAGTCGAGCTTC
AATTATCCAAAACGGATGGCAACGGGCATCGACCAAAACCGGATTTCGTTATTAATGGCTGTCCTTGAGAAACGGGTCGG
CATGCTTCTGCAGTCACAGGACGCTTATATCAAGGTGGCTGGCGGTGTCAAACTGGATGAACCGGCCATCGATTTGGCCG
TGCTGGCAAGCATTGTGTCCAGCTACCGGGACATTGCCCCGAACGTCTATGACTGCATCATCGGCGAAGTCGGATTGACC
GGCGAAGTGCGGCGTGTATCGCGCATTGAACAGCGGGTGCAGGAAGCTGCCAAGCTCGGCTTTAAACGCGCCATCATCCC
GGCTTCGAATCTGGGCGGCTGGGATTATCCGGAAGGAATCCGGGTAGTCGGCGTTGAAAGTGTCAACGATGCATTGAAAG
AAATATTCCCACAGCAGTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(363-430)

AAA domain (AAA_25)

(73-222)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

72.848

98.693

0.719
  radA Streptococcus pneumoniae Rx1

62.719

99.346

0.623
  radA Streptococcus pneumoniae D39

62.719

99.346

0.623
  radA Streptococcus pneumoniae R6

62.719

99.346

0.623
  radA Streptococcus pneumoniae TIGR4

62.719

99.346

0.623
  radA Streptococcus mitis NCTC 12261

62.719

99.346

0.623
  radA Streptococcus mitis SK321

62.719

99.346

0.623

Multiple sequence alignment