Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   ACM26V_RS19815 Genome accession   NZ_CP181045
Coordinates   4169267..4170220 (-) Length   317 a.a.
NCBI ID   WP_416148470.1    Uniprot ID   -
Organism   Salipaludibacillus sp. HK11     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4164267..4175220
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACM26V_RS19790 (ACM26V_19790) - 4164640..4165356 (+) 717 WP_416148460.1 PepSY domain-containing protein -
  ACM26V_RS19795 (ACM26V_19795) - 4165530..4166399 (+) 870 WP_416148462.1 PepSY domain-containing protein -
  ACM26V_RS19800 (ACM26V_19800) - 4166486..4167547 (-) 1062 WP_416148464.1 siderophore ABC transporter substrate-binding protein -
  ACM26V_RS19805 (ACM26V_19805) - 4167569..4168327 (-) 759 WP_416148466.1 ABC transporter ATP-binding protein -
  ACM26V_RS19810 (ACM26V_19810) - 4168321..4169277 (-) 957 WP_416148468.1 iron chelate uptake ABC transporter family permease subunit -
  ACM26V_RS19815 (ACM26V_19815) ceuB 4169267..4170220 (-) 954 WP_416148470.1 ABC transporter permease Machinery gene
  ACM26V_RS19820 (ACM26V_19820) - 4170690..4171499 (+) 810 WP_416148472.1 undecaprenyl-diphosphate phosphatase -
  ACM26V_RS19825 (ACM26V_19825) mgtE 4171594..4172955 (-) 1362 WP_416148474.1 magnesium transporter -
  ACM26V_RS19830 (ACM26V_19830) murB 4173553..4174467 (+) 915 WP_416148476.1 UDP-N-acetylmuramate dehydrogenase -
  ACM26V_RS19835 (ACM26V_19835) - 4174573..4174935 (+) 363 WP_416148477.1 ArsR/SmtB family transcription factor -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 35061.26 Da        Isoelectric Point: 10.3273

>NTDB_id=1097930 ACM26V_RS19815 WP_416148470.1 4169267..4170220(-) (ceuB) [Salipaludibacillus sp. HK11]
MQLRYLLITLVLLSFISLFIGVTSLSAMDIFNMTDHQSHIFWVSRVPRLISIIIAGMGMSIAGLIMQQLTRNKFVSPTTA
GTMDSARLGILVSIIIFSSAGSITKMLIAMAFAIAGTLLFMQILNRVKFKDPIFIPLVGLMFGNIIGSITTFFAYRYDLI
QNMTSWLQGNFATVMTGQYETLYISVPLVLLAYMYANRFTVAGMGEDFSKNLGLNYKQVVNLGLIIVAVITSSVVLTIGM
IPFLGLVVPNIVTIFRGDNIRKNLPHTAIFGAIFVLICDIIGRILIFPYEIPIGLTVGVIGSALFLYLLLRRRKYGL

Nucleotide


Download         Length: 954 bp        

>NTDB_id=1097930 ACM26V_RS19815 WP_416148470.1 4169267..4170220(-) (ceuB) [Salipaludibacillus sp. HK11]
ATGCAACTCAGATATTTGTTAATCACGCTAGTTTTATTGTCGTTTATATCGCTTTTCATTGGAGTTACCTCCCTTTCTGC
GATGGACATCTTTAACATGACAGATCATCAATCTCATATTTTTTGGGTCAGTCGAGTACCGCGCTTAATTAGTATTATCA
TTGCTGGAATGGGAATGAGTATTGCTGGACTGATTATGCAACAACTAACAAGAAACAAATTCGTCTCACCAACAACAGCT
GGAACGATGGACTCTGCAAGACTAGGAATTCTCGTTTCAATCATAATATTCTCTTCAGCCGGGTCGATAACGAAAATGCT
AATAGCTATGGCTTTTGCAATAGCTGGAACGTTGCTATTTATGCAAATACTTAATCGCGTAAAATTTAAAGACCCTATTT
TCATTCCTTTAGTCGGACTAATGTTCGGGAATATTATCGGTTCTATCACGACGTTTTTCGCTTATAGGTACGACCTCATT
CAGAATATGACCTCATGGTTACAGGGCAATTTTGCAACAGTGATGACAGGACAATATGAAACACTCTACATATCAGTTCC
GCTCGTTCTTCTTGCCTATATGTATGCAAATCGCTTTACCGTCGCTGGAATGGGAGAAGATTTTTCGAAAAACTTAGGTT
TGAATTACAAGCAAGTCGTTAATCTCGGCTTAATCATTGTTGCTGTGATTACTTCTTCTGTCGTACTAACGATTGGAATG
ATCCCATTTTTAGGGTTAGTTGTTCCAAATATTGTAACGATTTTCCGTGGAGATAATATTCGTAAGAACCTTCCACACAC
CGCCATATTTGGTGCAATATTCGTGCTAATTTGCGATATTATTGGAAGAATTTTGATCTTCCCTTACGAAATTCCGATTG
GATTAACCGTTGGTGTAATTGGCAGTGCTCTCTTCCTATATTTGCTGTTAAGGAGGAGAAAATATGGCCTATAG

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

54.114

99.685

0.539

Multiple sequence alignment