Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   ACLSQ1_RS25370 Genome accession   NZ_CP180722
Coordinates   4501085..4501459 (+) Length   124 a.a.
NCBI ID   WP_223269005.1    Uniprot ID   -
Organism   Priestia megaterium strain C/CMAD 2.2     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 4496085..4506459
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLSQ1_RS25350 (ACLSQ1_25350) - 4496576..4497247 (-) 672 WP_013058558.1 response regulator transcription factor -
  ACLSQ1_RS25355 (ACLSQ1_25355) - 4497573..4498391 (+) 819 WP_029323747.1 squalene/phytoene synthase family protein -
  ACLSQ1_RS25360 (ACLSQ1_25360) - 4498427..4500376 (-) 1950 WP_098288242.1 FUSC family protein -
  ACLSQ1_RS25365 (ACLSQ1_25365) - 4500532..4500792 (-) 261 WP_013058561.1 metal-sensitive transcriptional regulator -
  ACLSQ1_RS25370 (ACLSQ1_25370) nucA/comI 4501085..4501459 (+) 375 WP_223269005.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  ACLSQ1_RS25375 (ACLSQ1_25375) comJ 4501495..4501902 (+) 408 WP_064472036.1 competence protein ComJ -
  ACLSQ1_RS25380 (ACLSQ1_25380) helD 4501931..4504249 (-) 2319 WP_064472037.1 RNA polymerase recycling motor HelD -
  ACLSQ1_RS25385 (ACLSQ1_25385) - 4504494..4504619 (-) 126 WP_016765178.1 hypothetical protein -
  ACLSQ1_RS25390 (ACLSQ1_25390) - 4504759..4505277 (-) 519 WP_223272391.1 enoyl-CoA hydratase/isomerase family protein -
  ACLSQ1_RS25395 (ACLSQ1_25395) - 4505517..4505885 (+) 369 WP_029323759.1 winged helix-turn-helix transcriptional regulator -

Sequence

Protein


Download         Length: 124 a.a.        Molecular weight: 13661.90 Da        Isoelectric Point: 4.2601

>NTDB_id=1097676 ACLSQ1_RS25370 WP_223269005.1 4501085..4501459(+) (nucA/comI) [Priestia megaterium strain C/CMAD 2.2]
MGHAAFLAPEKTEAEVNYDATLYFPLDRYPETGDHIRDAIAAGHSSVCTIDRDGAEANREESLKGYPTKTGYDRDEWPMA
MCEEGGAGADIRYISPSDNRGAGSWVGNQLEQYPDGTRVQFIVQ

Nucleotide


Download         Length: 375 bp        

>NTDB_id=1097676 ACLSQ1_RS25370 WP_223269005.1 4501085..4501459(+) (nucA/comI) [Priestia megaterium strain C/CMAD 2.2]
ATGGGACATGCGGCGTTTTTAGCTCCTGAAAAAACGGAAGCTGAAGTAAACTACGATGCGACGCTTTATTTTCCGTTAGA
CCGATATCCTGAAACGGGTGATCATATTCGTGACGCGATTGCCGCTGGGCACTCTTCCGTTTGCACAATTGATCGCGACG
GTGCTGAAGCGAACCGGGAAGAATCGCTGAAAGGATATCCGACAAAAACAGGCTATGACCGTGATGAATGGCCAATGGCT
ATGTGCGAAGAAGGCGGAGCAGGAGCTGACATTCGCTATATTTCACCTTCTGATAACCGCGGAGCCGGCTCATGGGTTGG
AAATCAGTTAGAACAGTATCCAGATGGTACACGCGTACAATTTATCGTTCAATAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(30-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

67.227

95.968

0.645

Multiple sequence alignment