Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   ACM0AJ_RS07980 Genome accession   NZ_CP180713
Coordinates   1705308..1705913 (+) Length   201 a.a.
NCBI ID   WP_001202375.1    Uniprot ID   A0A5I0N148
Organism   Salmonella enterica subsp. enterica serovar Isangi strain SAL01261     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1700308..1710913
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACM0AJ_RS07960 (ACM0AJ_07960) - 1700703..1702463 (-) 1761 WP_000156459.1 AAA family ATPase -
  ACM0AJ_RS07965 (ACM0AJ_07965) matP 1702649..1703101 (+) 453 WP_000877172.1 macrodomain Ter protein MatP -
  ACM0AJ_RS07970 (ACM0AJ_07970) ompA 1703173..1704225 (-) 1053 WP_001670727.1 porin OmpA -
  ACM0AJ_RS07975 (ACM0AJ_07975) sulA 1704582..1705091 (-) 510 WP_000288732.1 SOS-induced cell division inhibitor SulA -
  ACM0AJ_RS07980 (ACM0AJ_07980) sxy/tfoX 1705308..1705913 (+) 606 WP_001202375.1 TfoX/Sxy family DNA transformation protein Regulator
  ACM0AJ_RS07985 (ACM0AJ_07985) yccS 1705900..1708053 (-) 2154 WP_080219090.1 YccS family putative transporter -
  ACM0AJ_RS07990 (ACM0AJ_07990) - 1708072..1708518 (-) 447 WP_001261222.1 YccF domain-containing protein -
  ACM0AJ_RS07995 (ACM0AJ_07995) helD 1708642..1710696 (+) 2055 WP_000420515.1 DNA helicase IV -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 23174.94 Da        Isoelectric Point: 8.7403

>NTDB_id=1097582 ACM0AJ_RS07980 WP_001202375.1 1705308..1705913(+) (sxy/tfoX) [Salmonella enterica subsp. enterica serovar Isangi strain SAL01261]
MRALSYDRIYKSQEYLASLGTIQYRSLFGSYSLTVEDTVFAMVANGELYLRACEESVPYCVKHPPAWLMFMKCGRPVMLN
YYRVDESLWRDQQQLVRLSKYSLDAAMKEKHSRILQHRLKDLPNMTFHLETLLNESGIKDENMLRILGAKMCWLRLRQSN
PLLTVKVLYALEGAIVGVHEAALPASRRQELADWAHSLTAG

Nucleotide


Download         Length: 606 bp        

>NTDB_id=1097582 ACM0AJ_RS07980 WP_001202375.1 1705308..1705913(+) (sxy/tfoX) [Salmonella enterica subsp. enterica serovar Isangi strain SAL01261]
ATGAGAGCACTCTCTTATGACAGGATCTATAAATCGCAAGAATATTTGGCCTCTCTGGGGACGATCCAGTATCGATCTTT
ATTCGGTAGCTATAGTCTGACCGTGGAGGATACCGTCTTTGCGATGGTGGCTAATGGCGAGCTTTATCTCCGCGCCTGTG
AAGAAAGCGTACCCTACTGTGTGAAGCATCCTCCCGCCTGGCTCATGTTCATGAAATGCGGACGTCCCGTTATGCTCAAC
TATTACCGGGTGGATGAAAGCCTGTGGCGCGATCAGCAGCAGCTGGTACGTTTATCGAAGTATTCTCTTGACGCGGCAAT
GAAGGAAAAACACAGCCGTATTTTACAGCACAGACTCAAAGATCTCCCCAATATGACCTTCCATCTGGAAACATTGCTCA
ATGAGTCAGGGATAAAGGACGAAAATATGTTACGCATACTGGGCGCGAAAATGTGCTGGCTAAGGTTGCGACAAAGCAAT
CCCTTGCTGACGGTGAAAGTTTTGTATGCCCTGGAAGGCGCAATTGTCGGCGTACATGAAGCGGCGCTCCCGGCGAGTCG
TCGTCAGGAGCTTGCCGACTGGGCTCATTCGCTTACGGCTGGGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5I0N148

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

75.879

99.005

0.751

Multiple sequence alignment